Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq28 206 3e-48 >seq28 Length=226377 Score = 206 bits (228), Expect = 3e-48 Identities = 532/805 (66%), Gaps = 4/805 (0%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 ||||| || | ||||||| ||||| | || |||||||| |||| || | | Sbjct 216890 CCTCAACACATGCTCATGCGTGTCGCCATTGGAATCCATGGAACCGACGTCGAAAAGGCC 216949 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||| || |||| ||| | ||||| ||||| ||||| | || || || ||| Sbjct 216950 ATCGAGACTTATAACCTCATGTCCGAGAAGACTTTCACCCACGCTTCTCCAACTCTCTTC 217009 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 ||||| || || | | || ||||| ||||||| | || | |||||||| ||| Sbjct 217010 AACGCTGGAACTCCTCATTCTCAAATGTCTTCCTGTTTCTTGGTCACCATGAAGGACGAC 217069 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 ||| || || |||||||| || |||||| ||| || ||||||||| | || Sbjct 217070 TCCATCGAAGGAATCTACGACACTCTCAAGACGTGTGCCATGATCTCCAAGACTGCAGGT 217129 Query 19343 GGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402 || ||||| || || | || || || | ||| | || ||| || || Sbjct 217130 GGAATCGGTCTCAACGTCCACAACATTCGTGGAACTGGATCTTACATTGCTGGAACCAAT 217189 Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462 ||| | || |||||||||| || ||||| || |||| ||||||||| || || |||||| Sbjct 217190 GGATTCTCCAACGGTATCGTTCCCATGCTACGTGTCTACAACAACACTGCTAGATACGTC 217249 Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522 | || || || ||| || || | || ||||||||| | ||||||||||| | Sbjct 217250 GATCAAGGAGGAAACAAGCGTCCAGGTGCCTTTGCCATCTACTTGGAGCCATGGCATTCA 217309 Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC-G 19581 |||||| | || ||| | || || || |||||| || | ||||| | || || | | Sbjct 217310 GACGTCTTCGAATTCTTGGATCTACGTAAGAACCACGGAAAGGAGGAAGTTCG-TGCCAG 217368 Query 19582 CGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640 || || ||| ||| ||| |||||||| ||||| |||||| ||| || |||||| ||| Sbjct 217369 AGAACTGTTCTACGCTCTT-TGGATTCCAGACCTCTTCATGAAGAGAGTAGAGAAGAACG 217427 Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGG 19700 | || ||| || | || || |||||||| || || | ||||||||||| |||| Sbjct 217428 AGGATTGGTCTCTACTTTGTCCTGGAGAATGCCCAGGTCTCGCTGACGTCTACGGAGAGG 217487 Query 19701 CGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGG 19760 ||| | | | ||| | |||| | || | || | ||||| ||| | Sbjct 217488 AATTCGAAGCTCTTTACACCAAGTACGAATCCGAAGGTAGAGCCAAGAGAACCGTCAAAG 217547 Query 19761 CCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGT 19820 | | | | ||| | | || | || || ||| || || | || |||||| Sbjct 217548 CTCAAAAGCTTTGGTATGCCATCTTGGAAGCTCAAACCGAAACTGGAAATCCTTACATGC 217607 Query 19821 GCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGT 19880 ||||||||||| || ||| ||| || ||||||||| | || | ||||||| | Sbjct 217608 TTTACAAGGACGCTGCAAACAGAAAGAGTAACCAGAAGAACCTAGGAACCATCAAGTGCT 217667 Query 19881 CCAACCTGTGTACTGAAATCATGGA 19905 | ||||| |||||||||||||| || Sbjct 217668 CAAACCTTTGTACTGAAATCATCGA 217692 Score = 206 bits (228), Expect = 3e-48 Identities = 522/791 (66%), Gaps = 2/791 (0%) Strand=Plus/Minus Query 79099 TCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTC 79158 ||||||||||| || || | || || |||||||||| || | |||||||||||| ||| Sbjct 217692 TCGATGATTTCAGTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCTGGTTACTC 217633 Query 79159 TT-CTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTT 79217 || || || ||| |||||||||| |||||| || | || || || ||| | Sbjct 217632 TTTCTGTTTGCAG-CGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTTGAGCTTC 217574 Query 79218 GAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGAC 79277 | | | | | ||| | | | || ||| ||||| | ||| | | | Sbjct 217573 CAAGATGGCATACCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTTCGGATTC 217514 Query 79278 GTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTC 79337 |||| | ||| | | | ||| |||| || ||||| || | || || ||||| || Sbjct 217513 GTACTTGGTGTAAAGAGCTTCGAATTCCTCTCCGTAGACGTCAGCGAGACCTGGGCATTC 217454 Query 79338 GTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGG 79397 || || | || ||| ||||||| |||||| || ||| |||||||||||| || Sbjct 217453 TCCAGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAAGAGGTCTGG 217394 Query 79398 GATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACG 79457 ||||| || || ||| || || | | ||| | ||||| | || |||||| ||| Sbjct 217393 AATCCAAAGAGCGTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTGGTTCTTACG 217334 Query 79458 CAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACC 79517 || || | || || | || ||| | ||||| ||||||| |||||||| || | ||| Sbjct 217333 TAGATCCAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGCAAAGGCACC 217274 Query 79518 CTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCAT 79577 |||||| || || || | |||||| | || ||||||||| | || || ||||| Sbjct 217273 TGGACGCTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGACACGTAGCAT 217214 Query 79578 GGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAAT 79637 ||| ||||| |||| || || || || || || || | || | | ||||| Sbjct 217213 GGGAACGATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGTTCCACGAAT 217154 Query 79638 GTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAG 79697 ||| | || || ||||| || || | ||||||||| || ||| |||||| Sbjct 217153 GTTGTGGACGTTGAGACCGATTCCACCTGCAGTCTTGGAGATCATGGCACACGTCTTGAG 217094 Query 79698 CGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACAT 79757 || |||||||| || ||||| |||||||||||||| | ||||| ||| ||| ||||| Sbjct 217093 AGTGTCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAGGAAGACAT 217034 Query 79758 CTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTG 79817 || | | || || ||||||||||| || || | ||||| ||||| ||| | Sbjct 217033 TTGAGAATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGTGAAAGTCTTCTC 216974 Query 79818 GCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGC 79877 | ||| || | || ||||| || | || |||| || ||||| || | || Sbjct 216973 GGACATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATGGATTCCAATGGC 216914 Query 79878 GACGCGCATGA 79888 ||| ||||||| Sbjct 216913 GACACGCATGA 216903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524368036720