Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq28 208 8e-49 >seq28 Length=226377 Score = 208 bits (230), Expect = 8e-49 Identities = 518/769 (67%), Gaps = 18/769 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGT---GACGACTACACGCGTGTCCGTGAGACGT 53249 ||||||| |||||| | || ||||| || |||| | | | | || ||||| | Sbjct 216903 TCATGCGTGTCGCCATTGGAATCCATGGAACCGACGTCGAAAAGGCCATC---GAGACTT 216959 Query 53250 ACGACTTAATGAGCCAAAAGTACTTT-ACGCACGCCACGCCAACCCTGTTCAACGCTGGT 53308 | || | ||| | | ||| ||||| || ||||| | ||||| || ||||||||||| Sbjct 216960 ATAACCTCATGTCCGAGAAG-ACTTTCACCCACGCTTCTCCAACTCTCTTCAACGCTGGA 217018 Query 53309 ACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGAC 53368 || ||| |||| ||||| ||| ||| |||| | |||||||| ||||| ||||| Sbjct 217019 ACTCCTCATTCTCAAATGTCTTCCTGTTTCTTGGTCACCATGAAGGACGACTCCATCGAA 217078 Query 53369 GGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGT 53428 || |||||||| || |||||| ||||||| ||||||||| | ||||| |||||| Sbjct 217079 GGAATCTACGACACTCTCAAGACGTGTGCCATGATCTCCAAGACTGCAGGTGGAATCGGT 217138 Query 53429 ATCCACTGCTCGAACGTCCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGC 53487 || || | ||| | |||| |||| | | | || || || || || || | Sbjct 217139 CTCAACGTCCACAACATTCGTG-GAACTGGATCTTACATTGCTGGAACCAATGGATTCTC 217197 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | | || ||||| || ||||| || |||| ||||||||| || | |||||| | || || Sbjct 217198 CAACGGTATCGTTCCCATGCTACGTGTCTACAACAACACTGCTAGATACGTCGATCAAGG 217257 Query 53548 TGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 || ||||| | ||| | | || ||||||||| | ||||| ||||| | ||| | Sbjct 217258 AGGAAACAAGCGTCCAGGTGCCTTT-GCCATCTACTTGGAGCCATGGCATTCAGACGTCT 217316 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC-GTGACCTG 53665 | || || | || || ||| ||| || || | || || | || |||| | || ||| Sbjct 217317 TCGAATTCTTGGATCTACGTAAGAACCACGGAAAGGAGGAAGTTCG-TGCCAGAGAACTG 217375 Query 53666 TT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTG 53724 || ||| ||||| |||||||| |||||||||||| | | || |||||| ||||||| || Sbjct 217376 TTCTAC-GCTCTTTGGATTCCAGACCTCTTCATGAAGAGAGTAGAGAAGAACGAGGATTG 217434 Query 53725 GTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAA 53784 || || | || || || ||||| || ||| | |||||||| ||||| || | Sbjct 217435 GTCTCTACTTTGTCCTGGAGAATGCCCAGGTCTCGCTGACGTCTACGGAGAGGAATTCGA 217494 Query 53785 CGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGA 53844 | | || | ||||| | | || | ||||| | ||||| || | | Sbjct 217495 AGCTCTTTACACCAAGTACGAATCCGAAGGTAGAGCCAAGAGAACCGTCAAAGCTCAAAA 217554 Query 53845 GGTATGGGATGCAATCCTCAAGAGC-CAGGTGGAGACGGGAACGCCGTACATGTGCTACA 53903 | | ||| |||| ||| | | ||| || || || |||| || |||||| |||| Sbjct 217555 GCTTTGGTATGCCATCTTGGA-AGCTCAAACCGAAACTGGAAATCCTTACATGCTTTACA 217613 Query 53904 AGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 |||| | | ||| ||||| |||||||||||| | || |||||| Sbjct 217614 AGGACGCTGCAAACAGAAAGAGTAACCAGAAGAACCTAGGAACCATCAA 217662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215569067400