Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 158 1e-33 seq1 143 3e-29 seq15 132 5e-26 seq28 116 4e-21 >seq4 Length=1327562 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | || || ||||| || ||||| || || || || || Sbjct 1258184 ATGCAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGA 1258125 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | || || ||||||||||||||||| ||||| || || || || Sbjct 1258124 GATACCATCGACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCAA 1258065 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||| || || |||||| | || || | | | ||| | ||||||| || Sbjct 1258064 CAAAGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAACCTTGTCAGACTACAAC 1258005 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| |||||||| | ||||| |||||||| || || Sbjct 1258004 ATCCAAAAGGAATCGACTCTTCACTTGGTCTTACGTCTTCGTGGAGG 1257958 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | ||||| |||||||||||| | || || || || || Sbjct 1257956 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGT 1257897 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||||| || ||||| ||||||||||||||||| || || || Sbjct 1257896 GATACTATTGATAACGTTAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCTGATCAA 1257837 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||||| || |||||||| || ||| | || || | | | || | ||| || || || Sbjct 1257836 CAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGC-GATTACAA 1257778 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||||||||||||| |||||| | || | ||||| || |||||| Sbjct 1257777 CATTCAAAAGGAATCCACCCTTCATTTGGTTCTTCGTCTACGTGGTGGA 1257729 Score = 136 bits (150), Expect = 5e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| |||||||| |||||||| ||||| ||||| ||||| || Sbjct 1258714 ATGCAGATCTTCGTAAAGACTCTTACCGGAAAGACTATCACTCTAGAGGTAGAGTCTGGA 1258655 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||||||||| || ||||| || || ||||| || ||||| Sbjct 1258654 GACACCATTGACAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCTGACCAA 1258595 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || ||||||||| | || || | | ||||| ||||||| || Sbjct 1258594 CAGAGATTGATCTTCGCCGGTAAGCAATTGGAAGACGGAAGAACCCTCTCAGACTACAAC 1258535 Query 27586 GTCCA 27590 |||| Sbjct 1258534 ATCCA 1258530 Score = 127 bits (140), Expect = 2e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || | || || ||||| || ||||| || || || || ||| Sbjct 1259215 ATGCAAATCTTCGTCAAAACTTTAACTGGAAAGACCATCACTCTCGAAGTGGAATCTGGT 1259156 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || ||||| || ||||| || || ||||| ||||| Sbjct 1259155 GACACCATCGACAACGTAAAGGCAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAA 1259096 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||| |||||||| || |||| | | || || ||||||| || Sbjct 1259095 CAACGTCTCATCTTTGCTGGAAAGCAACTGGAAGATGGTAGAACTCTTTCAGACTACAAC 1259036 Query 27586 GTCCA 27590 |||| Sbjct 1259035 ATCCA 1259031 >seq1 Length=2409711 Score = 143 bits (158), Expect = 3e-29 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 |||||| || || ||||| | || || |||||||| || || ||||||||||| ||||| Sbjct 336551 GCAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGA 336492 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | || | ||| | ||||| ||||| || |||||||| |||||||| ||||| || || Sbjct 336491 CACTATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACA 336432 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGT 27587 | |||| |||||||| |||||| | || |||| | ||||| | || || || | Sbjct 336431 AAGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAACAT 336372 Query 27588 CCAAAAGGAATCCACTCTTCAT 27609 ||||||||||| ||||||||| Sbjct 336371 TCAAAAGGAATCTACTCTTCAT 336350 Score = 113 bits (124), Expect = 5e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || ||||| ||||| || || ||||| || || || || || || || ||||| Sbjct 640415 AAGGCCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAACAACGACTCATCTTTGCC 640356 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || |||||||| || || | | | ||| || ||||||| || | ||||||||||||||| Sbjct 640355 GGAAAGCAACTAGAAGACGGTAGAACCTTATCAGACTACAACATTCAAAAGGAATCCACT 640296 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||| | ||| | |||||| | |||||| Sbjct 640295 CTCCATTTGGTCCTACGTCTTAGAGGTGGA 640266 >seq15 Length=848729 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 || |||||| || |||||||| | ||||| ||||| || || || ||||| || || || Sbjct 551984 AAGGCAAATTTTCGTCAAGACCTTGACCGGTAAGACGATCACCCTAGAGGTCGAATCCGG 552043 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || || || |||||||| ||||| ||||| ||||| Sbjct 552044 TGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGACCA 552103 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATA 27583 || | | || ||||||||||| || | || || | | | || || ||| || || | Sbjct 552104 ACAAAGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTAGAACTCTGAGC-GATTACA 552162 Query 27584 ATGTCCAAAAGGAATCCACTCTTCA 27608 || |||| |||||||||||||| || Sbjct 552163 ATATCCAGAAGGAATCCACTCTGCA 552187 >seq28 Length=226377 Score = 116 bits (128), Expect = 4e-21 Identities = 494/767 (64%), Gaps = 29/767 (4%) Strand=Plus/Minus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTC---AGCATCTGTAAACTCGACGATTTCCGT 80963 ||| |||| ||||| ||||| || || || |||| ||||| |||| |||||| || Sbjct 217735 GGAAGCCAAGTTGCAGACGGCTACTTCATCCGGAGCA-CTGTAT--TCGATGATTTCAGT 217679 Query 80964 GCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGC 81023 || | || || |||| || || || ||||| |||||||| ||| ||| ||| Sbjct 217678 ACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCTGGTTACTCTTTCTGTTTGCAGC 217619 Query 81024 GTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCA 81083 ||||||||| |||||| || | || || ||| || | | | |||||| | ||| Sbjct 217618 GTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTTGAGCTTCCAAGATGGCATACCA 217559 Query 81084 AATCTCGCGCGCCTTGAC----CACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGT 81139 || || | || ||||| | | | || | | ||||||| | ||||||| || Sbjct 217558 AAGCTTTTGAGCTTTGACGGTTCTCTTGGC----TCTACCTTCGGATTCGTACTTGGTGT 217503 Query 81140 AAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199 || | ||||| | | |||| | |||| ||| ||||||| || ||| || | Sbjct 217502 AAAGAGCTTCGAATTCCTCTCCGTAGACGTCAGCGAGACCTGGGCATTCTCCAGGACAAA 217443 Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259 || ||| || || |||||||| ||||||||| ||| || ||||| || | Sbjct 217442 GTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAAGAGGTCTGGAATCCAAAGAG 217383 Query 81260 CGGTGAACAGGTCGC-GGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGA 81318 || |||||| || | |||| || | ||||| | || ||||| || | || | Sbjct 217382 CGTAGAACAGTTCTCTGGCA-CGAACTTCCTCCTTTCCGTGGTTCTTACGTAGATCCAAG 217324 Query 81319 AAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTG-CGACG 81377 || || | || ||| | |||||||||||||| || | ||| | | | ||| | || Sbjct 217323 AATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGC-AAAGGCACCTGGACGCTT 217265 Query 81378 G---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGAT 81434 | || || || | |||||| | ||||| ||| | ||||| | ||| || | ||| Sbjct 217264 GTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGACACGTAGCATGGGAACGAT 217205 Query 81435 ACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGA- 81493 ||| | || || || || || | || || || | | || | ||| || Sbjct 217204 ACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGTTCCACGAATGTTGTGGAC 217145 Query 81494 -TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552 ||| |||||||| ||||||| ||| || ||| |||||| || | || || Sbjct 217144 GTTG--AGACCGATTCCACCTGCAGTCTTGGAGATCATGGCACACGTCTTGAGAGTGTCG 217087 Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612 || ||||| |||||| || | |||||| | |||||||||| ||||| ||| | Sbjct 217086 TAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAGGAAGACATTTGA--G 217029 Query 81613 CTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAA 81657 | ||| || || ||||| || ||||| | ||||| ||||| Sbjct 217028 AATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGTGAAA 216982 Score = 100 bits (110), Expect = 3e-16 Identities = 129/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 80043 CAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAG 80102 || |||||| | || ||||| | ||||||||||| ||||| | |||||| ||| | || Sbjct 218611 CAAATAGTAAGTTCCAGTCTTCAAACCCTTCTTCCAACCGTAGAAGTGCATTGAAGTAAG 218552 Query 80103 CTT--CGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAA 80160 | || |||| | | | ||| |||||||| ||| ||||| ||||| |||||| Sbjct 218551 TTGACCGAAAGTAGGAGCGGATAGATG--GATGTTCAAAGATTGAGATTGACAAATGAAA 218494 Query 80161 GCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || || | ||| || ||||| || || || ||||| || ||||||||||| || || Sbjct 218493 GCACCTCTATCAGCAGCCATATCGATGATAGACTTCTGAGGAATTTCCCAAACAGT 218438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309950880560