Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4 114 8e-21 seq1 105 4e-18 >seq4 Length=1327562 Score = 114 bits (126), Expect = 8e-21 Identities = 163/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTGAAAGTGTTC 34546 ||||| | |||||||| || ||| |||||||||||||| |||| || ||| |||| Sbjct 1257739 AGACGAAGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAA--GTTC 1257796 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 ||||||| | |||||| || ||||| || | ||| ||||| || || || | ||||| Sbjct 1257797 TACCGTCTTCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCT 1257856 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTC-TTCGCTCTCCACTTCCAC 34664 |||||||| ||| |||| |||||| || ||| || || | | | || ||||||| Sbjct 1257857 CCTTGTCT-TGAATCTTTGCCTTAACGTTATCAATAGTATCACTAGAT-TCGACTTCCAA 1257914 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| || || || || ||||| ||||| Sbjct 1257915 AGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 >seq1 Length=2409711 Score = 105 bits (116), Expect = 4e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||| | ||||||||||||||| |||||||||||||| || ||||| Sbjct 640267 CCACCTCTAAGACGTAGGACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGAT 640326 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| ||||| || |||||||| || | || ||||| || || || Sbjct 640327 AAGGTTCTACCGTCTTCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTGGA 640386 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | || || |||||| ||||| Sbjct 640387 ATACCTTCTTTGTCTTGAATCTT 640409 Score = 102 bits (112), Expect = 5e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| ||||| |||||||||||||| ||||| ||||| |||| | ||||| Sbjct 336345 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCATCTTCC 336404 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| || || ||||| ||||| | ||||| || || || | ||| ||||||||| | Sbjct 336405 AATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGG 336464 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||| | || || | || ||||| | ||| || || | ||| || || || Sbjct 336465 AT-TTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGTCTT 336523 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGC 34704 ||| ||||| || || || ||||| ||| Sbjct 336524 ACCCGTTAAGGTCTTAACGAAAATTTGC 336551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729358346679