Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 152 1e-31 seq4 150 4e-31 seq15 138 3e-27 seq6 93.3 1e-13 seq28 89.7 1e-12 >seq1 Length=2409711 Score = 152 bits (168), Expect = 1e-31 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| || || ||||| ||||| ||||||| |||||| ||||||||||||| ||| Sbjct 336351 TGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCATCTTCCAATTGC 336410 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | | |||||| || || |||| |||||||||||| ||||| || Sbjct 336411 TTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTG 336470 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || ||||| |||||| ||||||||||| ||||| ||||| ||||| Sbjct 336471 GCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGTCTTACCCGTT 336530 Query 211092 AGAGTCTTTACAAA 211105 | ||||| || || Sbjct 336531 AAGGTCTTAACGAA 336544 Score = 105 bits (116), Expect = 2e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | ||| || | ||| || || || ||||| |||||||| ||||| | || || Sbjct 640747 ACGTAGACGTAGTACCAAGTGCAGGGTTGATTCTTTCTGGATGTTGTAATCAGACAGAGT 640806 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| ||||| |||| ||||| || || ||||| || |||||||| || || || | ||| Sbjct 640807 CCTACCATCCTCCAATTGCTTTCCAGCAAAGATTAGACGTTGTTGATCCGGTGGGATTCC 640866 Query 211013 TTCCTTGTCCTGGATCTT 211030 ||||||||| ||||| || Sbjct 640867 TTCCTTGTCTTGGATTTT 640884 >seq4 Length=1327562 Score = 150 bits (166), Expect = 4e-31 Identities = 171/228 (75%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || ||| | ||||||||| || || ||||||||||| || || | | Sbjct 1257960 TCCACGAAGACGTAAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCTGACAA 1258019 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| || || ||||| | ||||| |||||||| || | | |||||| || || || | Sbjct 1258020 GGTTCTACCGTCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGGGTGGGAT 1258079 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGT---CAGAGCTTTCAAC 211066 ||||||||||||||| || || ||| ||||| |||||||| | |||| ||| || Sbjct 1258080 TCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTGTCGATGGTATCTCCAGA---TTCGAC 1258136 Query 211067 CTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| |||||||| || | ||||| ||||| | ||||| Sbjct 1258137 TTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184 Score = 149 bits (164), Expect = 1e-30 Identities = 144/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 210930 TGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGG 210989 |||||||| || || | ||| || || ||||||||||| ||||| || || ||||| || Sbjct 1259031 TGGATGTTGTAGTCTGAAAGAGTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAGA 1259090 Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 ||||||||||||||||| | |||||||| || || |||||| || ||||| |||||| Sbjct 1259091 CGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTGCCTTTACGTTGTCGATG 1259150 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 |||||| ||| || ||||||||||| |||||||| || | ||| || || || | Sbjct 1259151 GTGTCACCAGATTCCACTTCGAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGATT 1259210 Query 211110 TGCAT 211114 ||||| Sbjct 1259211 TGCAT 1259215 Score = 132 bits (146), Expect = 1e-25 Identities = 143/188 (76%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 210930 TGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGG 210989 |||||||| || || | ||||| ||||| ||||||| ||||| || |||||||| | Sbjct 1258530 TGGATGTTGTAGTCTGAGAGGGTTCTTCCGTCTTCCAATTGCTTACCGGCGAAGATCAAT 1258589 Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 | ||||||||||| |||| ||||| ||||| ||||| || || || || || ||| Sbjct 1258590 CTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTGTCAATG 1258649 Query 211050 GTGT---CAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 |||| |||| || ||||| |||||||| |||||||| || ||||||||||| || Sbjct 1258650 GTGTCTCCAGA---CTCTACCTCTAGAGTGATAGTCTTTCCGGTAAGAGTCTTTACGAAG 1258706 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 1258707 ATCTGCAT 1258714 >seq15 Length=848729 Score = 138 bits (152), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| |||||||| || || ||||| || ||||| || || || || ||| Sbjct 552196 AGGACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCT 552137 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || || ||||| | | ||||||||| ||||| | |||||||||||| Sbjct 552136 TCCAACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCT 552077 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | ||| ||||| || ||||||||| Sbjct 552076 TGGATCTTGGCCTTGACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATCGTC 552017 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 || || || | ||||| || || | ||| ||| Sbjct 552016 TTACCGGTCAAGGTCTTGACGAAAATTTGCCTTT 551983 >seq6 Length=1288008 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| ||||| || ||||||||||||| ||||| || || ||||||| ||||||| Sbjct 395286 CCGTCTTCTAGCTGTTTACCTGCGAAGATAATACGTTGCTGATCGGGAGGAATTCCTTCC 395345 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 || || || ||||| ||| ||||| ||||| |||||| Sbjct 395346 TTATCTTGAATCTTGGCTTTGACGTTGTCGATCGTGTCA 395384 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 ||||| ||||||||||||| ||||| ||||| || | ||| ||||||| || |||||| Sbjct 105916 AGGGTTCTTCCATCTTCCAATTGCTTTCCTGCAAAAACAAGACGTTGTTTCTCTGGAGGA 105975 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 | ||||| ||||| || ||||| ||| | || ||||| ||||| Sbjct 105976 ATGCCTTCTTTGTCTTGAATCTTGCATTTGATGTAGTCGATAGTGTC 106022 >seq28 Length=226377 Score = 89.7 bits (98), Expect = 1e-12 Identities = 195/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCA 178145 |||| | |||||| ||||| ||||||||| || || ||||| ||| | || Sbjct 217655 TTCCTAGGTTCTTCTGGTTACTCTTTCTGTTTGCAGCGTCCTTGTAAAGCATGTAAGGAT 217596 Query 178146 TTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCT 178205 |||| || | |||||| | | ||| || |||||||| || ||| ||| || Sbjct 217595 TTCCAGTTTCGGTTTGAGCTTCCAAGATGGCATACCAAAGCTTTTGAGCTTTGACGGTTC 217536 Query 178206 TTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGA 178265 | |||||| | ||||| |||||||| |||| || | ||||||||| ||| |||| Sbjct 217535 TCTTGGCTCTACCTTCGGATTCGTACTTGGTGTAAAGAGCTTCGAATTCCTCTCCGTAGA 217476 Query 178266 CATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCA 178325 | ||| ||||||| || || || || | ||| ||| | ||| | || | Sbjct 217475 CGTCAGCGAGACCTGGGCATTCTCCAGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTA 217416 Query 178326 CTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAATCTCTCTGGC 178377 ||| |||||||||||||| | |||| | || ||||| | |||||||| Sbjct 217415 CTCTCTTCATGAAGAGGTCTGGAATCCAAAGAGCGTAGAACAGTTCTCTGGC 217364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151064346995