Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4 122 6e-23 seq1 111 1e-19 >seq4 Length=1327562 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || | || ||||| || || ||| | ||||| || || | Sbjct 1257956 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGT 1257897 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| || |||| |||| | || ||||| || || | || || ||||| Sbjct 1257896 GATACTATTGATAACGTTAAGGCAAAGA-TTCAAGACAAGGAGGGAATTCCACCTGATCA 1257838 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| || |||||| ||||||||| | ||||| |||||||||| Sbjct 1257837 ACAACGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGATTACAA 1257778 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| || ||||| | ||||| ||| Sbjct 1257777 CATTCAAAAGGAATCCACCCTTCATTTGGTT 1257747 Score = 86.0 bits (94), Expect = 4e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || ||||| || |||||||| || || || || Sbjct 1258714 ATGCAGATCTTCGTAAAGACTCTTACCGGAAAGACTATCACTCTAGAGGTAGAGTCTGGA 1258655 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||| | ||||||||||| | || || || || Sbjct 1258654 GACACCATTGACAATGTCAAGGCTAAAA-TCCAAGACAAAGAAGGCATTCCACCTGACCA 1258596 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || || ||||| || ||| ||||||||| | | || | || ||||| Sbjct 1258595 ACAGAGATTGATCTTCGCCGGTAAGCAATTGGAAGACGGAAGAACCCTCTCAGACTACAA 1258536 Query 23790 CATACA 23795 ||| || Sbjct 1258535 CATCCA 1258530 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| | || ||||| || |||||||||||||| || || Sbjct 1259215 ATGCAAATCTTCGTCAAAACTTTAACTGGAAAGACCATCACTCTCGAAGTGGAATCTGGT 1259156 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| ||| ||| || || |||||| | || || || ||| Sbjct 1259155 GACACCATCGACAACGTAAAGGCAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAA 1259096 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA 23765 || ||| | || ||||| || || ||||||||||| Sbjct 1259095 CAACGTCTCATCTTTGCTGGAAAGCAACTGGAAGA 1259061 >seq1 Length=2409711 Score = 111 bits (122), Expect = 1e-19 Identities = 179/251 (71%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 ||| ||||||||||| ||| | ||||| || || ||||| ||||| ||||| || || Sbjct 336551 GCAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGA 336492 Query 23673 CACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 |||| | || ||| | || | |||| | ||||| ||||| | || |||||||||| Sbjct 336491 CACTATCGACAATGTCAAGGCCAAAA-TCCAAGACAAGGAAGGAATTCCACCAGATCAAC 336433 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGATTACAA 23789 | | ||||| ||||| || || ||| ||||||| | | | || ||| || ||||||| Sbjct 336432 AAAGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGG--ATTACAA 336375 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGA-GGATCAGCAGTTA 23848 ||| ||||| || || || | ||||| || | |||| || | |||||| || | Sbjct 336374 CATTCAAAAGGAATCTACTCTTCATTTGGTACTTCGGTT---AGTACAGATCAGGAGATC 336318 Query 23849 AAGATGAATTG 23859 | |||| |||| Sbjct 336317 ATGATGGATTG 336307 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||||||| | || || |||||||| || | || |||||||| || ||||| ||| Sbjct 640400 GACAAAGAAGGTATTCCACCCGATCAACAACGACTCATCTTTGCCGGAAAGCAACTAGAA 640341 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| | || ||| || |||||||| ||||| || ||||| | ||||| || Sbjct 640340 GACGGTAGAACCTTATCAGACTACAACATTCAAAAGGAATCCACTCTCCATTTGGT 640285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009340472004