Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq15 174 4e-38 seq4 140 8e-28 seq1 127 5e-24 seq28 86.0 1e-11 seq6 84.2 5e-11 >seq15 Length=848729 Score = 174 bits (192), Expect = 4e-38 Identities = 167/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| ||||||||||| || |||| |||||||||| || |||||| || ||| Sbjct 552196 AGGACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTTCTACCGTCT 552137 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || ||||| ||||| | || |||||||||||| || || |||||||||||| Sbjct 552136 TCCAACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCT 552077 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || |||||||| || ||| || |||| ||||||||| Sbjct 552076 TGGATCTTGGCCTTGACATTGTCAATGGTGTCACCGGATTCGACCTCTAGGGTGATCGTC 552017 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTT 225715 || || ||||| || || | ||| | |||| ||| Sbjct 552016 TTACCGGTCAAGGTCTTGACGAAAATTTGCCTTT 551983 >seq4 Length=1327562 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 225529 TGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGT 225588 |||| ||||| || | | |||||| |||||||| || ||||| ||||| ||||| || Sbjct 1259031 TGGATGTTGTAGTCTGAAAGAGTTCTACCATCTTCCAGTTGCTTTCCAGCAAAGATGAGA 1259090 Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 ||||||||||| || || ||||||||||| ||||| |||||| ||| || |||||| Sbjct 1259091 CGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTGCCTTTACGTTGTCGATG 1259150 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 ||||| | |||||| || | ||||| ||||| || || |||||||| | ||| | | Sbjct 1259151 GTGTCACCAGATTCCACTTCGAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGATT 1259210 Query 225709 TGCAT 225713 ||||| Sbjct 1259211 TGCAT 1259215 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||||||| ||||| | ||||||||| ||||||||| || ||||| | || Sbjct 1257754 TGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAAGTTCTACCGTCTTCCAATTGT 1257813 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| |||||||| |||||||| || || ||||| || ||||||||||| |||||| Sbjct 1257814 TTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCTTGTCTTGAATCTTT 1257873 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || || || || || | ||| || || || || || ||||| || ||| Sbjct 1257874 GCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTAATAGTCTTTCCGGTC 1257933 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| | |||||| Sbjct 1257934 AAAGTCTTGACGAAAATTTGCAT 1257956 Score = 129 bits (142), Expect = 1e-24 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | ||| | ||| ||||| ||||| ||||||| ||||| || | ||| || Sbjct 1257963 ACGAAGACGTAAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCTGACAAGGT 1258022 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| || ||||||| ||||| || ||||| || | || |||||| ||||| || || || Sbjct 1258023 TCTACCGTCTTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGGGTGGGATTCC 1258082 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||| || || ||| || || || |||||||| ||| | ||| || || | Sbjct 1258083 TTCCTTGTCCTGAAT-TTTGGCTTTGACGTTGTCGATGGTATCTCCAGATTCGACTTCGA 1258141 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || ||||| || || | || | |||||| Sbjct 1258142 GAGTGATGGTCTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184 Score = 104 bits (114), Expect = 6e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 225529 TGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGT 225588 |||| ||||| || | | ||||| || ||||| | ||||| || |||||||| | | Sbjct 1258530 TGGATGTTGTAGTCTGAGAGGGTTCTTCCGTCTTCCAATTGCTTACCGGCGAAGATCAAT 1258589 Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 | |||||||| || ||||| ||||| ||||||||||| || ||| ||| || ||| Sbjct 1258590 CTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTGTCAATG 1258649 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 |||||| | || || |||| ||||| ||||| || || | ||| |||| ||| | Sbjct 1258650 GTGTCTCCAGACTCTACCTCTAGAGTGATAGTCTTTCCGGTAAGAGTCTTTACGAAGATC 1258709 Query 225709 TGCAT 225713 ||||| Sbjct 1258710 TGCAT 1258714 >seq1 Length=2409711 Score = 127 bits (140), Expect = 5e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||||||||||| ||||| | ||||| || | || ||||| || ||| Sbjct 640282 AGGACCAAATGGAGAGTGGATTCCTTTTGAATGTTGTAGTCTGATAAGGTTCTACCGTCT 640341 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||| ||||| || || ||||| ||||||||||| ||||| ||||||||||| |||||| Sbjct 640342 TCTAGTTGCTTTCCGGCAAAGATGAGTCGTTGTTGATCGGGTGGAATACCTTCTTTGTCT 640401 Query 225622 TGGATCTT 225629 || ||||| Sbjct 640402 TGAATCTT 640409 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| ||||| ||||| | |||||||| | | ||||| |||||||| | ||| Sbjct 336351 TGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCATCTTCCAATTGC 336410 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| | || |||||| || || ||||| ||||||||||||||||| || Sbjct 336411 TTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTG 336470 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||||| ||||| | || || || | ||||| ||||| ||||| Sbjct 336471 GCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGTCTTACCCGTT 336530 Query 225691 AAAGTTTTTATGAACACTTGC 225711 || || || | ||| | |||| Sbjct 336531 AAGGTCTTAACGAAAATTTGC 336551 Score = 107 bits (118), Expect = 5e-18 Identities = 105/134 (78%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || |||||||| |||| |||||||| | || ||| || ||||| Sbjct 640757 AGTACCAAGTGCAGGGTTGATTCTTTCTGGATGTTGTAATCAGACAGAGTCCTACCATCC 640816 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| ||||| ||||| || |||||||| || || || || |||||||||||| Sbjct 640817 TCCAATTGCTTTCCAGCAAAGATTAGACGTTGTTGATCCGGTGGGATTCCTTCCTTGTCT 640876 Query 225622 TGGATCTTTTGCTT 225635 ||||| ||| |||| Sbjct 640877 TGGAT-TTTGGCTT 640889 >seq28 Length=226377 Score = 86.0 bits (94), Expect = 1e-11 Identities = 173/257 (67%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 193524 GCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGCTTGAGCGACGAGAATGTGATGC 193583 ||||| ||||| | ||| | || | || || | |||||| | | ||| || | Sbjct 217620 GCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTTGAGCTTCCAAGATGGCATAC 217561 Query 193584 CAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTAC 193643 ||||| | ||||||||| || || | |||| | ||||| |||||||| ||| Sbjct 217560 CAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTTCGGATTCGTACTTGGTGTAA 217501 Query 193644 AGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAAAG 193703 || | || || || | |||||||| || ||||||| || ||| || |||| Sbjct 217500 AGAGCTTCGAATTCCTCTCCGTAGACGTCAGCGAGACCTGGGCATTCTCCAGGACAAAGT 217441 Query 193704 AGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTCAGATGTCCAAATGGCG 193763 ||| |||||| | | | || || ||||||||||||||||| | |||||| ||| Sbjct 217440 AGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAAGAGGTCTGGAATCCAAAGAGCG 217381 Query 193764 TAGAAAAGTTGTCTCGC 193780 ||||| |||| ||| || Sbjct 217380 TAGAACAGTTCTCTGGC 217364 >seq6 Length=1288008 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 225541 TCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCG 225600 || |||||||| || ||||||||||| || || |||||||||| ||||| || ||| Sbjct 395271 TCTGCCAAAGTATGACCGTCTTCTAGCTGTTTACCTGCGAAGATAATACGTTGCTGATCG 395330 Query 225601 GGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||| |||||||| ||||| ||||| Sbjct 395331 GGAGGAATTCCTTCCTTATCTTGAATCTT 395359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530237403722