Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq28 316 3e-81 seq23 107 3e-18 >seq28 Length=226377 Score = 316 bits (350), Expect = 3e-81 Identities = 1172/1822 (64%), Gaps = 41/1822 (2%) Strand=Plus/Minus Query 76802 TGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAA 76861 ||| ||| | || | | |||||| | ||||| || | |||| |||| |||||||| Sbjct 218626 TGCAGGTCTAGTTCTCAAATAGTAAGTTCCAGTCTTCAAACCCTTCTTCCAACCGTAGAA 218567 Query 76862 ATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACT 76921 ||||| || |||| || ||||| ||| || ||| || |||| || ||| Sbjct 218566 GTGCATTGAAGTAAGTTGACCGAAAGTAGGAGCGGATAGATGGATGTTCAAAGATTGAGA 218507 Query 76922 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 76981 |||| |||||||| ||||||||||| ||||| | || || | ||| ||||||||||| Sbjct 218506 TTGACAAATGAAAGCACCTCTATCAGCAGCCATATCGATGATAGACTTCTGAGGAATTTC 218447 Query 76982 CCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG-TA--TTTTGAATGGA 77038 ||||| ||| ||| | | ||||| |||||||| || || |||||||| || Sbjct 218446 CCAAACAGTCTTGTATAAAGCCTTGATTCTATCTGGAATTCCTGGTACGTTTTGAATCGA 218387 Query 77039 ACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTT-- 77096 ||||||| | || || | ||||| || |||| ||| || ||| |||| Sbjct 218386 TCCACCATGAGCGATGATCCTGTTCTTCATCGATTCATCCCATAAA--CCT---TGTTCG 218332 Query 77097 ---AAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGA 77153 || |||| | | |||||| || | ||| |||||||||| ||| ||||||||| Sbjct 218331 ACCAATTCTCTCAACAACCAAGGATTGACGACTTGGAATTCTCCAGCCAAGACTCTACGA 218272 Query 77154 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTA 77213 | ||| || || || || ||||| | |||| ||| ||||| ||||||| |||| Sbjct 218271 GAGTAGATGTTTGAAGTGTAAGGTTCGAAGCATTCGTTGAAACCCAAGATTTGAGAAGTA 218212 Query 77214 GAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTA 77273 || ||||||||||| || || | | | | || | ||||||||| || || || Sbjct 218211 GAGGCAGTTGGCATTGGAGCTAGAAGAAGAGAGTTACGTAGACCATGTTTTGCCATCTTT 218152 Query 77274 TCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGT 77333 | || | | |||||||||||||||||||||| ||| |||| | |||||||| Sbjct 218151 GCCTTCAATGAAGTCCAATCCCAAAGATCTGAAGGAGTGACACCCCACATGTCGTATTGA 218092 Query 77334 AGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCT 77393 || ||| | ||| || ||| | || || ||||||||||| |||||||| Sbjct 218091 AGTTCTCCTTGACTTGCTGGACTTCCCTCGTAAGTAGAGTAAGGTCCTTCGATTTCAGCT 218032 Query 77394 AGTTCACAACTCGC-TTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 77452 | ||| | | | |||||| || ||| ||| || |||||||| || | ||||| Sbjct 218031 AATTCG-ATCGAACGTTCCAAAGCGGCGTGATAGATGGTTTCGAAGATTTGGACGTTGAG 217973 Query 77453 ATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCC 77512 | | ||||| | || || |||||| | | || || ||||| |||| || Sbjct 217972 CTTACGAGCTTCTGGAGAGTCGAAAGGATAACCCATGATCATGAAAGCATCAGCTAGACC 217913 Query 77513 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGG 77572 ||||| || || || || || | ||| | |||||| |||||| | ||| Sbjct 217912 TTGAACACCGATTCCGATTGGACGATGACGGAAGTTGGAACGACGAGCTTCCTCGACAGG 217853 Query 77573 ATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTT 77632 || || || ||||| || || || ||||| |||| | || || || || | | Sbjct 217852 GTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTCCACAAATGACCTTGGAGACCTTGTG 217793 Query 77633 TAGTTTAAGAAAATCAAA--TCTTC-------CATCTATAACAAACATGTTCAAAG--CT 77681 || || || | |||| | || || | | ||| ||| | Sbjct 217792 GAGACGTTCGAAGTCGTAGGTCTTGGTAGCAGCGTCGATGA-----AGGTTGGAAGAGCG 217738 Query 77682 ATAGATGCTAGATTACAAACTGCTACCTCATT---AGCGTTGGCATATTGTATTATCTCG 77738 || || || | || || || ||||| |||| ||| || |||| || || || Sbjct 217737 ATGGAAGCCAAGTTGCAGACGGCTACTTCATCCGGAGCACTG---TATTCGATGATTTCA 217681 Query 77739 GTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATT-GCA 77797 ||||| || || || ||||| || || || || | ||||| |||||| | || ||| Sbjct 217680 GTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCTGGTTACTCTTTCTGTTTGCA 217621 Query 77798 TGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTT 77857 | |||||| ||||| || | ||| | || ||||| | || | ||| | || | | Sbjct 217620 -GCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTTGAGCTTCCAAGATGGCATA 217562 Query 77858 CCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATA 77917 ||| | | |||||| | | ||| || | || ||| || | || || Sbjct 217561 CCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTTCGGATTCGTACTTGGTGTA 217502 Query 77918 TAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACAT 77977 || ||| ||||| ||||| | || ||| | | || |||||||| || || | Sbjct 217501 AAGAGCTTCGAATTCCTCTCCGTAGACGTCAGCGAGACCTGGGCATTCTCCAGGACAAAG 217442 Query 77978 CAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGC 78037 | ||||| || | | | || |||| ||||| ||||| || || ||||| ||||| Sbjct 217441 TAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAAGAGGTCTGGAATCCAAAGAGC 217382 Query 78038 AATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAA 78097 || || |||| || | | ||| || ||||| ||||| ||||| | || Sbjct 217381 GTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTGGTTCTTACGTAGATCCAAGAA 217322 Query 78098 CTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATT 78157 || | | || ||||||||||| || | || || || | | || || || || || Sbjct 217321 TTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGCAAAGGCACCTGGACGCTTGTT 217262 Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||||| ||||| | ||||| || ||||| || || || | | ||| |||| ||||| Sbjct 217261 TCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGACACGTAGCATGGGAACGATACC 217202 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 ||| || |||||| ||||||| ||| ||| |||| || | ||||| || | | Sbjct 217201 GTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGTTCCACGAATGTTGTGGACGTT 217142 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT-TTCAATGTATCGTAGA 78336 | || ||||| ||||| |||| || || | || | |||| || | || ||||||| Sbjct 217141 GAGACCGATTCCACCTGCAGTCTTGGAGATCATGGCAC-ACGTCTTGAGAGTGTCGTAGA 217083 Query 78337 TACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 78396 | || || || ||| ||| ||||| | | | |||||| |||||||||| |||| Sbjct 217082 TTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAGGAAGACATTTGAGAATGAG 217023 Query 78397 CAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGAT 78456 |||||| || || || | || ||||| || || || || || || || | || | Sbjct 217022 GAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGTGAAAGTCTTCTCGGACATGAGGT 216963 Query 78457 TGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCA 78516 | || || || || || ||| | ||| | ||| ||||| | || |||||||| | Sbjct 216962 TATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATGGATTCCAATGGCGACACGCATGA 216903 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| || ||||| | ||| | ||| ||| ||| | | ||| ||| | || | Sbjct 216902 GCATGTGTTGAGGACGTTCGGCGACCTTTCCATTGATTCGTAGAAGGTAAGATCTCTCAA 216843 Query 78577 AAGTTTTAAAACCAAAATAGTT 78598 ||| || ||||| || |||| Sbjct 216842 GAGTCTTGAAACCGAAGAAGTT 216821 >seq23 Length=563827 Score = 107 bits (118), Expect = 3e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 |||||| || ||||| ||| | |||||||||||| ||| |||||||||||||| || Sbjct 139420 TAAACAAGCGAAATCGGTATGTAAACCTTCATCTCTTGAAATCAATTCGTTAGAAAAAGT 139479 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256 | ||| ||||||| || | || |||| ||| || |||| || ||||||||||| || Sbjct 139480 CAAACCTGGCATTAAACCTCTCTTCTTGATCCAGAAGATTGAAGCAAAAGATCCAGAGAA 139539 Query 48257 GAATATGCCTTCTACGGCCGCAAATGC 48283 || || ||||| ||||| || || || Sbjct 139540 AAAGATACCTTCGACGGCAGCGAAAGC 139566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668252948320