Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq28 329 5e-85 seq23 127 3e-24 >seq28 Length=226377 Score = 329 bits (364), Expect = 5e-85 Identities = 1185/1837 (65%), Gaps = 31/1837 (2%) Strand=Plus/Minus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 ||||| |||| | | || ||| ||| | || | | |||||| | ||||| || | | Sbjct 218646 GTGAATTGAACAGCATTGGCTGCAGGTCTAGTTCTCAAATAGTAAGTTCCAGTCTTCAAA 218587 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATA 75496 ||| |||| |||||||| ||||| || |||| || | ||| ||| || | Sbjct 218586 CCCTTCTTCCAACCGTAGAAGTGCATTGAAGTAAGTTGACCGAAAGTAGGAGCGGATAGA 218527 Query 75497 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 75556 || || |||| || ||| |||| |||||||| ||||||||||| ||||| | || Sbjct 218526 TGGATGTTCAAAGATTGAGATTGACAAATGAAAGCACCTCTATCAGCAGCCATATCGATG 218467 Query 75557 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA-G 75615 || | ||| |||||||||||||||| ||| ||| | | ||||| |||||||| Sbjct 218466 ATAGACTTCTGAGGAATTTCCCAAACAGTCTTGTATAAAGCCTTGATTCTATCTGGAATT 218407 Query 75616 ATTTGTA--TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTC 75673 | ||| |||||||| ||||| |||| || || || | ||||| ||| |||| | Sbjct 218406 CCTGGTACGTTTTGAATCGATCCACCATGAGCGATGATCCTGTTCTTCATCGATTCATCC 218347 Query 75674 CACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCA 75733 || || | ||| || |||| | | |||||| || | ||| ||||||||| Sbjct 218346 CATAAACCTTGTTCGACCAATTCTCTCAACAACCAAGGATTGACGACTTGGAATTCTCCA 218287 Query 75734 GACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 75793 | ||| ||||| |||| ||| || || || || ||||| | |||| ||| ||| Sbjct 218286 GCCAAGACTCTACGAGAGTAGATGTTTGAAGTGTAAGGTTCGAAGCATTCGTTGAAACCC 218227 Query 75794 AAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 75853 || ||||||| ||| || ||||| ||||| || || | | | | || | |||||| Sbjct 218226 AAGATTTGAGAAGTAGAGGCAGTTGGCATTGGAGCTAGAAGAAGAGAGTTACGTAGACCA 218167 Query 75854 TGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCC 75913 ||| || || || | || | | ||||||||||||||||||| || ||| || Sbjct 218166 TGTTTTGCCATCTTTGCCTTCAATGAAGTCCAATCCCAAAGATCTGAAGGAGTGACACCC 218107 Query 75914 CAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTC 75973 || | |||||||| || ||| | || || ||| | || || ||||| Sbjct 218106 CACATGTCGTATTGAAGTTCTCCTTGACTTGCTGGACTTCCCTCGTAAGTAGAGTAAGGT 218047 Query 75974 CCGTCCTTTTCAGCTAGTTCGCAACTCGC-CTCTAACGCACCGTAATAAATTGTTTCGAA 76032 || || ||||||||| |||| | | | || || || ||| ||| || |||||||| Sbjct 218046 CCTTCGATTTCAGCTAATTCG-ATCGAACGTTCCAAAGCGGCGTGATAGATGGTTTCGAA 217988 Query 76033 AATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAA 76092 || | || || | | ||||| || || ||||||||| | | || || Sbjct 217987 GATTTGGACGTTGAGCTTACGAGCTTCTGGAGAGTCGAAAGGATAACCCATGATCATGAA 217928 Query 76093 TGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTC 76152 ||||| ||||| || ||||| || || || || || | ||| | |||||| Sbjct 217927 AGCATCAGCTAGACCTTGAACACCGATTCCGATTGGACGATGACGGAAGTTGGAACGACG 217868 Query 76153 AGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACT-A 76211 |||||| | |||||| || || || || || || || ||||| |||| |||| | | Sbjct 217867 AGCTTCCTCGACAGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTC-CACAAATGA 217809 Query 76212 CTTT---AACCACGTCCTTTAGTTTGA----GAAAATCAAATT--TTCCATCTATCACAA 76262 | || ||| || ||| || | | || || | || | | | Sbjct 217808 CCTTGGAGACCTTGTGGAGACGTTCGAAGTCGTAGGTC---TTGGTAGCAGCGTCGATGA 217752 Query 76263 ACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT---TAGCATTGGCAT 76319 | | |||||| || || || | || || |||||||| |||| |||| || | Sbjct 217751 AGGTTGGAAGAGCGATGGAAGCCAAGTTGCAGACGGCTACTTCATCCGGAGCACTG---T 217695 Query 76320 ATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGC 76379 ||| || || || || || || || |||||||| ||||| || || | ||||| | Sbjct 217694 ATTCGATGATTTCAGTACAAAGGTTTGAGCACTTGATGGTTCCTAGGTTCTTCTGGTTAC 217635 Query 76380 TCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATT 76439 ||||| |||| | |||||| ||||| | | ||| |||||||||| | || | || Sbjct 217634 TCTTTCTGTTTGCAGCGTCCTTGTAAAGCATGTAAGGATTTCCAGTTTCGGTTTGAGCTT 217575 Query 76440 CGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCTTT 76499 | | || | | ||| | | |||||| | | ||| || || || Sbjct 217574 CCAAGATGGCATACCAAAGCTTTTGAGCTTTGACGGTTCTCTTGGCTCTACCTTCGGATT 217515 Query 76500 CATA--TTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACA 76557 | || | ||||| | | | ||| ||||| ||||| | || ||| | | ||| || || Sbjct 217514 CGTACTTGGTGTAAAGAGC--TTCGAATTCCTCTCCGTAGACGTCAGCGAGACCTGGGCA 217457 Query 76558 TTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATC 76617 ||| ||||| | | ||||| || | | | || || | ||||| ||||| || Sbjct 217456 TTCTCCAGGACAAAGTAGAGACCAATCCTCGTTCTTCTCTACTCTCTTCATGAAGAGGTC 217397 Query 76618 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTT 76677 || ||||| ||||| || || |||| || | | ||| || ||||| ||||| Sbjct 217396 TGGAATCCAAAGAGCGTAGAACAGTTCTCTGGCACGAACTTCCTCCTTTCCGTGGTTCTT 217337 Query 76678 TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAAC 76737 ||||| | ||| || | | || ||||||||||| || | || || || | | Sbjct 217336 ACGTAGATCCAAGAATTCGAAGACGTCTGAATGCCATGGCTCCAAGTAGATGGCAAAGGC 217277 Query 76738 ACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAA 76797 ||| || || || || ||||| ||||| | ||||| |||||||| || || || | | Sbjct 217276 ACCTGGACGCTTGTTTCCTCCTTGATCGACGTATCTAGCAGTGTTGTTGTAGACACGTAG 217217 Query 76798 CATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACG 76857 ||| |||| || ||||| || ||||| ||||||| ||| ||| |||| | |||| Sbjct 217216 CATGGGAACGATACCGTTGGAGAATCCATTGGTTCCAGCAATGTAAGATCCAGTTCCACG 217157 Query 76858 AATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT-T 76916 ||| || | || || ||||| ||||| | || ||||| | ||||| ||| | Sbjct 217156 AATGTTGTGGACGTTGAGACCGATTCCACCTGCAGTCTTGGAGATCATGGCACA-CGTCT 217098 Query 76917 TCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAG 76976 | | ||||| ||||| || || || || ||| ||||| | | | |||||| || Sbjct 217097 TGAGAGTGTCGTAGATTCCTTCGATGGAGTCGTCCTTCATGGTGACCAAGAAACAGGAAG 217038 Query 76977 ACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATT 77036 |||||||| |||| |||||| || || || | || ||||| || || ||||| | Sbjct 217037 ACATTTGAGAATGAGGAGTTCCAGCGTTGAAGAGAGTTGGAGAAGCGTGGGTGAAAGTCT 216978 Query 77037 TTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTA 77096 | || || | || || || || || || | ||| | || | ||| ||||| | Sbjct 216977 TCTCGGACATGAGGTTATAAGTCTCGATGGCCTTTTCGACGTCGGTTCCATGGATTCCAA 216918 Query 77097 CAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACA 77156 ||||||||||| | ||| || ||||| ||||| | ||| ||| ||| | | Sbjct 216917 TGGCGACACGCATGAGCATGTGTTGAGGACGTTCGGCGACCTTTCCATTGATTCGTAGAA 216858 Query 77157 AGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 77193 ||| ||| | || | ||| || ||||| || |||| Sbjct 216857 GGTAAGATCTCTCAAGAGTCTTGAAACCGAAGAAGTT 216821 >seq23 Length=563827 Score = 127 bits (140), Expect = 3e-24 Identities = 341/513 (66%), Gaps = 14/513 (3%) Strand=Plus/Plus Query 46373 TAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAA 46432 ||||||| || | || || || || ||||| ||||| || ||||| ||| |||||| Sbjct 139167 TAGTTTTACCCTGTAAAGAAATGTTCTCCATGAAATCGAAAGGATTCGTAGAGTTATAA- 139225 Query 46433 tttttttAAATCCTAATTCTGAA-ATCAGTCTATCTGCAACGAATTCTATATACGTTTTC 46491 | ||| | | | | || || | |||||||| ||||||||||| ||||| | Sbjct 139226 TGTTTGTCATTACCAAGAGAGACCAAAAGTCTATCAGCAACGAATTCAATATATTGACAC 139285 Query 46492 ATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGT-AAGAAACTCTTG 46550 || | || | |||||||| ||||| | |||| ||| || | |||||| || | Sbjct 139286 ATTAATTTAGCGTTCATTCCAATGAGAGCGCAAGGTAAAGCGTCTCTCAAGAAAGCCT-G 139344 Query 46551 TTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCAT 46610 |||||| ||||| || | || || | || || || | | | | | | Sbjct 139345 TTCAATTCCAACAGCTTCAGTAATGATAGCCAAAACCGTATCTGGATGAGCTCTCTTCTT 139404 Query 46611 CAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAA 46670 ||||| || | |||||| || ||||| ||| | ||||||||||| ||| || Sbjct 139405 TAAATGAGAGAATAATAAACAAGCGAAATCGGTATGTAAACCTTCATCTCTTGAAATCAA 139464 Query 46671 TTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGC 46730 |||||||||||| || | || ||||||| || | ||| |||| ||| || || | || Sbjct 139465 TTCGTTAGAAAAAGTCAAACCTGGCATTAAACCTCTCTTCTTGATCCAGAAGATTGAAGC 139524 Query 46731 GAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC--- 46787 ||||||||||| || || || ||||| || || ||||| || || | ||| || | Sbjct 139525 AAAAGATCCAGAGAAAAAGATACCTTCGACGGCAGCGAAAGCTACTAATCTTTCAGCAAA 139584 Query 46788 -GTAAC--TGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACA 46844 || | ||| ||||| ||||| ||| |||||| || |||||| || || Sbjct 139585 GGTTGCTTTGGTGTCATT---GATCCATCTTAAAGCCCATTCTCCCTTTTGTTTGACGAC 139641 Query 46845 AGGCATTGTTTCTATAGCATTAAAGA-GAAAGT 46876 || || || |||| |||| ||||| |||||| Sbjct 139642 TGGAATCGTCTCTAAGGCATCAAAGAGGAAAGT 139674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933838564160