Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4 109 1e-18 seq1 98.7 2e-15 >seq4 Length=1327562 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 151920 TGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGC 151979 ||||||||||| || | | ||||| || ||||| | || ||||||||||| | Sbjct 1258530 TGGATGTTGTAGTCTGAGAGGGTTCTTCCGTCTTCCAATTGCTTACCGGCGAAGATCAAT 1258589 Query 151980 CTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACG 152039 ||||| ||||| | | || ||||| || ||||| ||||| |||||| | || | | Sbjct 1258590 CTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTGTCAATG 1258649 Query 152040 CTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACC 152099 ||||| | |||||| || ||||| ||||| || || || |||||||| ||||||| | Sbjct 1258650 GTGTCTCCAGACTCTACCTCTAGAGTGATAGTCTTTCCGGTAAGAGTCTTTACGAAGATC 1258709 Query 152100 TGCAT 152104 ||||| Sbjct 1258710 TGCAT 1258714 Score = 104 bits (114), Expect = 5e-17 Identities = 151/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || || |||||||||||||| || | || ||||| || ||||||| Sbjct 1257978 CAAG-TGAAGAGTCGATTCCTTTTGGATGTTGTAGTCTGACAAGGTTCTACCGTCTTCTA 1258036 Query 151957 --GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| || ||||| || | || || || || | | |||||||||||| || || Sbjct 1258037 ATTGCTTT--CCTGCGAAAATCAATCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCCTG 1258094 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| |||||| | || | | | ||| | || ||||| ||||| || || || Sbjct 1258095 AATTTTGGCTTTGACGTTGTCGATGGTATCTCCAGATTCGACTTCGAGAGTGATGGTCTT 1258154 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | ||||| || |||| ||||| Sbjct 1258155 TCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || || || ||||| |||||||||||| |||||||| || ||| Sbjct 1257745 AGAACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAAGTTCTACCGTCT 1257804 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || || |||||||| | || || || | | ||||| ||||| ||| Sbjct 1257805 TCCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCTTGTCT 1257864 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| || || | || | | || | || ||||| | ||||||||| Sbjct 1257865 TGAATCTTTGCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTAATAGTC 1257924 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | |||||| ||||| | ||||| Sbjct 1257925 TTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 151920 TGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAA 151977 ||||||||||| || | | |||||| |||||||| || ||||| || || ||||| | Sbjct 1259031 TGGATGTTGTAGTCTGAAAGAGTTCTACCATCTTCCAGTTGCTTT--CCAGCAAAGATGA 1259088 Query 151978 GCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTA 152037 | | || ||||| | | ||| |||||||| |||||||| ||| || || | || | Sbjct 1259089 GACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTTTGCCTTTACGTTGTCGA 1259148 Query 152038 CGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGA 152097 | |||| | || ||||| ||||| || || || || || | ||| || ||||||| Sbjct 1259149 TGGTGTCACCAGATTCCACTTCGAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAGA 1259208 Query 152098 CCTGCAT 152104 ||||| Sbjct 1259209 TTTGCAT 1259215 >seq1 Length=2409711 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||||||||| || ||||| ||||||||||| | | ||||| |||||| Sbjct 336342 AGTACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATCCGAAAGGGTTCTTCCATCT 336401 Query 151953 TCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || || ||||| | || || || || | | ||||||||||| | Sbjct 336402 TCCAATTGCTTT--CCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGT 336459 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| ||||| |||||| | || | |||| | ||| || || || || |||| Sbjct 336460 CTTGGATTTTGGCCTTGACATTGTCGATAGTGTCACCAGACTCAACCTCGAGGGTGATAG 336519 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAA 152095 | || ||||| | ||||| ||||| Sbjct 336520 TCTTACCCGTTAAGGTCTTAACGAA 336544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819868650273