Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq15 104 2e-17 seq4 93.3 3e-14 seq1 82.4 5e-11 >seq15 Length=848729 Score = 104 bits (114), Expect = 2e-17 Identities = 152/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 |||| ||| || ||| ||||| ||||| ||||||||| ||||| | |||| | Sbjct 552193 ACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGCTCAGAGTT--CTACCGTCTT 552136 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| ||| || || ||||||||||| | || || || | ||| | |||||||| || Sbjct 552135 CCAACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCGGGAGGGATTCCTTCCTTGTCTT 552076 Query 44247 TTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| || ||| | |||||||| ||||||| ||||| | || ||||| Sbjct 552075 GGATCTTGGCCTTGACATTGT--CAATGGTGTCACCGGATTCGACCTCTAGGGTGATCGT 552018 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335 ||| || || | |||||| ||||| |||||| Sbjct 552017 CTTACCGGTCAAGGTCTTGACGAAAATTTGC 551987 >seq4 Length=1327562 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/188 (72%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 44153 TGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCA 44210 ||||||||||| || | ||||| | | || ||||| ||||| || |||||||| | Sbjct 1259031 TGGATGTTGTAGTCTGAAAGAGTT--CTACCATCTTCCAGTTGCTTTCCAGCAAAGATGA 1259088 Query 44211 AACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CT 44269 ||| || || || | ||| | ||||||||| || ||||| ||| | | ||| | Sbjct 1259089 GACGTTGTTGGTCAGGAGGGATACCTTCCTTATCTTGAATCTT-TGCCTTTACGTTGTCG 1259147 Query 44270 ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAG 44329 |||||||| | |||||||| || | || || |||||||| || | || || |||||| Sbjct 1259148 ATGGTGTCACCAGATTCCACTTCGAGAGTGATGGTCTTTCCAGTTAAAGTTTTGACGAAG 1259207 Query 44330 ATTTGCAT 44337 |||||||| Sbjct 1259208 ATTTGCAT 1259215 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG--GCGAGTTGGCGCTCGTCGT 44186 |||| ||||| ||| |||||||| |||||||||||| |||| | |||| | Sbjct 1257748 ACCAAATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGCTCAAAGTT--CTACCGTCTT 1257805 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| || || || |||||||| | ||| || ||||| | || | || ||||| || Sbjct 1257806 CCAATTGTTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCCTCCTTGTCTT 1257865 Query 44247 TTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| | || ||| | || || || ||||| || |||| ||||| ||| Sbjct 1257866 GAATCTT-TGCCTTAACGTTATCAATAGTATCACTAGATTCGACTTCCAAAGTAATAGTC 1257924 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | ||||| ||||| |||||||| Sbjct 1257925 TTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 1257956 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTC 44184 || |||| |||||| || ||||||||||||||||| || | | || | | |||| Sbjct 1257973 AAGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCTGACAAGGTTCTAC-CGTC 1258031 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || | ||||| || || || ||||| | || ||||| | || | |||||||| || Sbjct 1258032 TTCTAATTGCTTTCCTGCGAAAATCAATCTTTGTTGATCGGGTGGGATTCCTTCCTTGTC 1258091 Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | || || |||| | ||| | ||||| || | ||||| || || | || || | Sbjct 1258092 CTGAATTTTG-GCTTTGACGTTGTCGATGGTATCTCCAGATTCGACTTCGAGAGTGATGG 1258150 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || | |||||| || ||||||||||| Sbjct 1258151 TCTTTCCTGTCAAGGTCTTGACAAAGATTTGCAT 1258184 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 44153 TGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCA 44210 ||||||||||| || | ||| || || |||| |||| ||||| ||||| ||||||| Sbjct 1258530 TGGATGTTGTAGTCTGAGAG--GGTTCTTCCGTCTTCCAATTGCTTACCGGCGAAGATCA 1258587 Query 44211 AACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCC 44268 | | ||| || || | || | ||||| || || || || ||| || ||| | Sbjct 1258588 ATCTCTGTTGGTCAGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTGT--C 1258645 Query 44269 TATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 |||||||| | || || ||||| | || || |||||||| || || ||||| ||||| Sbjct 1258646 AATGGTGTCTCCAGACTCTACCTCTAGAGTGATAGTCTTTCCGGTAAGAGTCTTTACGAA 1258705 Query 44329 GATTTGCAT 44337 ||| ||||| Sbjct 1258706 GATCTGCAT 1258714 >seq1 Length=2409711 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/211 (70%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGT 44186 |||| ||||| || |||||||| ||||||||||| ||| || || | || | Sbjct 336345 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAATC--CGAAAGGGTTCTTCCATCTT 336402 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| ||||| || |||||||| || | || ||||||| || | |||||||| || Sbjct 336403 CCAATTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGAATTCCTTCCTTGTCTT 336462 Query 44247 TTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 || || ||| || ||| | || ||||| | || || ||||| | || || || Sbjct 336463 GGATTTTGGCCTTGACATTGT--CGATAGTGTCACCAGACTCAACCTCGAGGGTGATAGT 336520 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335 ||| ||||| | |||||| ||||| |||||| Sbjct 336521 CTTACCCGTTAAGGTCTTAACGAAAATTTGC 336551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990123594871