Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Golubevia_20pallescens_20[genbank_20GCA_5F001599655.1_202016-03-01] 63 sequences; 27,756,302 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 149 2e-30 seq15 145 2e-29 seq1 123 6e-23 >seq4 Length=1327562 Score = 149 bits (164), Expect = 2e-30 Identities = 142/182 (78%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | || ||||| || ||||| ||||| |||||| ||| Sbjct 1259212 CAAATCTTCGTCAAAACTTTAACTGGAAAGACCATCACTCTCGAAGTGGAATCTGGTGAC 1259153 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||||||| || || ||||| |||||||| ||||| ||| Sbjct 1259152 ACCATCGACAACGTAAAGGCAAAGATTCAAGATAAGGAAGGTATCCCTCCTGACCAACAA 1259093 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| || || |||||||| || |||||| | || || ||| || Sbjct 1259092 CGTCTCATCTTTGCTGGAAAGCAACTGGAAGATGGTAGAACTCTTTCAGACTACAACATC 1259033 Query 178104 CA 178105 || Sbjct 1259032 CA 1259031 Score = 131 bits (144), Expect = 4e-25 Identities = 155/206 (75%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | |||||||| || ||||| ||||| || ||| ||| Sbjct 1258181 CAAATCTTTGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAAGTCGAATCTGGAGAT 1258122 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| || ||||||||||| ||||||||||| || || || ||| Sbjct 1258121 ACCATCGACAACGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCCGATCAACAA 1258062 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || ||||| ||||| || | ||||| || || || |||| | || || ||| | Sbjct 1258061 AGATTGATTTTCGCAGGAAAGCAATTAGAAGACGGTAGAAC-CTTGTCAGACTACAACAT 1258003 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 |||||| ||||| || || || |||| Sbjct 1258002 CCAAAAGGAATCGACTCTTCA-CTTG 1257978 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || ||||| || || || | || || ||| || Sbjct 1257953 CAAATTTTCGTCAAGACTTTGACCGGAAAGACTATTACTTTGGAAGTCGAATCTAGTGAT 1257894 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||||||| ||||| || ||||| || || || || ||| Sbjct 1257893 ACTATTGATAACGTTAAGGCAAAGATTCAAGACAAGGAGGGAATTCCACCTGATCAACAA 1257834 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || |||||||| | ||||| || || ||| | |||||| ||| | Sbjct 1257833 CGTCTTATCTTTGCTGGAAAACAATTGGAAGACGGTAGAACTTTGAGCGATTACAACATT 1257774 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || || ||| | ||| Sbjct 1257773 CAAAAGGAATCCACCCTTCATTTGGTT 1257747 Score = 104 bits (114), Expect = 6e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || ||||| || ||||| || |||| Sbjct 1258711 CAGATCTTCGTAAAGACTCTTACCGGAAAGACTATCACTCTAGAGGTAGAGTCTGGAGAC 1258652 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| || || || ||||||||||| || || || ||||| || Sbjct 1258651 ACCATTGACAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCTGACCAACAG 1258592 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || || | ||||| ||||| || || | || || ||| || Sbjct 1258591 AGATTGATCTTCGCCGGTAAGCAATTGGAAGACGGAAGAACCCTCTCAGACTACAACATC 1258532 Query 178104 CA 178105 || Sbjct 1258531 CA 1258530 >seq15 Length=848729 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || ||||||||||| ||||| ||| | ||| Sbjct 551988 CAAATTTTCGTCAAGACCTTGACCGGTAAGACGATCACCCTAGAGGTCGAATCCGGTGAC 552047 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| || ||||| |||||||||||||| ||||| ||| Sbjct 552048 ACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGACCAACAA 552107 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || |||||| | ||||| || || ||||| |||||| || || Sbjct 552108 AGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGTAGAACTCTGAGCGATTACAATATC 552167 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || ||||| |||| Sbjct 552168 CAGAAGGAATCCACTCTGCA-CTTG 552191 >seq1 Length=2409711 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || || |||||||||||||| || ||| Sbjct 336550 CAAATTTTCGTTAAGACCTTAACGGGTAAGACTATCACCCTCGAGGTTGAGTCTGGTGAC 336491 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| || || || ||||| |||||||| || || || || ||| Sbjct 336490 ACTATCGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAACAA 336431 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| || | ||||||||||| || ||| | ||||| ||| | Sbjct 336430 AGATTAATCTTTGCTGGAAAGCAATTGGAAGATGGAAGAACCCTTTCGGATTACAACATT 336371 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| ||||| || || ||| Sbjct 336370 CAAAAGGAATCTACTCTTCAT 336350 Score = 111 bits (122), Expect = 4e-19 Identities = 105/133 (79%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 177996 GTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTC 178055 |||||| || || || ||||| ||||||||||| ||||| || ||||| || ||||| Sbjct 640893 GTCAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCGGATCAACAACGTCTAATCTTT 640834 Query 178056 GCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCA 178115 || ||||| || | || ||||| |||||||| | ||||| ||| |||| ||||||||| Sbjct 640833 GCTGGAAAGCAATTGGAGGATGGTAGGACTCTGTCTGATTACAACATCCAGAAAGAATCA 640774 Query 178116 ACACTGCATCTTG 178128 || ||||| |||| Sbjct 640773 ACCCTGCA-CTTG 640762 Score = 91.5 bits (100), Expect = 4e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| ||||||||||| || || || || || |||||||| ||||| |||||||| Sbjct 640409 AAGATTCAAGACAAAGAAGGTATTCCACCCGATCAACAACGACTCATCTTTGCCGGAAAG 640350 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || ||||| || || || | | || || ||| | ||||| ||||| || || ||| Sbjct 640349 CAACTAGAAGACGGTAGAACCTTATCAGACTACAACATTCAAAAGGAATCCACTCTCCAT 640290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730228363222