Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq993 107 4e-18 seq124 91.5 3e-13 >seq993 Length=568693 Score = 107 bits (118), Expect = 4e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || || |||||||| || |||||| | || |||||||| || || |||||||| | Sbjct 486887 CTCATCGGTATGAACGCAGACCTTATGTGCCAATACATCGAGTTTGTCGCCGACCGTTTG 486828 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || || ||||| |||| || ||| | | | |||||| || | || ||||| Sbjct 486827 CTCGTCGCGCTTGGGAACGAAAAGCACTACCGCGCGACGAACCCGTTCGACTTCATGGAT 486768 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGT 230609 | || ||||||||||| |||||||||||||| || |||||||| Sbjct 486767 ATGATCTCGCTTCAAGGCAAGACCAACTTCTTTGAGAAGCGTGT 486724 Score = 100 bits (110), Expect = 6e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || |||||||||||||| | || ||| | || |||||||| ||||| ||||| ||| | Sbjct 489703 CTCATTGGCATGAACGCCAAGCTCATGTGCCAATACATCGAGTTCGTTGCCGATCGCCTG 489762 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || || ||||| | ||||| |||| | | ||||| || | || ||||| Sbjct 489763 CTCGTCGCCCTTGGAGATGAGAAGCAGTACGGCGTCACCAACCCGTTCGACTTCATGGAC 489822 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA-TCAGAG 230624 | || || || ||||| |||||||||||||| || ||||| ||| ||||| || || Sbjct 489823 ATGATCTCACTCCAAGGCAAGACCAACTTCTTTGAGAAGCGCGTCTCCGACTACTCCAAG 489882 Query 230625 GCCTGGTGT 230633 ||| ||||| Sbjct 489883 GCC-GGTGT 489890 >seq124 Length=125365 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 282633 GCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCTCTCGCGACCG 282692 |||||||| |||||||||||||| || || || || || ||||| | | ||||||||| Sbjct 97961 GCATCGCGCACGTTCAGCAACTTTCCACGAAGCGGGAAGACACCGAAGTTGTCGCGACCG 97902 Query 282693 ACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAATCTCCCTCCGTCAAGATGAGA 282752 || || || || ||||| || |||| |||||||| || |||||||||||||| Sbjct 97901 ACGACACCGAGACCAGCAATGGCGAGTGCCCTGGCGGAATCACCTTCCGTCAAGATGAGC 97842 Query 282753 GTACA 282757 || || Sbjct 97841 GTGCA 97837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057806705899880