Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq993 138 1e-27 >seq993 Length=568693 Score = 138 bits (152), Expect = 1e-27 Identities = 372/568 (65%), Gaps = 6/568 (1%) Strand=Plus/Minus Query 24124 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 24183 |||| | ||| || ||||| ||| || | ||||| || | || | |||||| | Sbjct 489547 TAAAGAGCAAGCAAGCGAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCG 489488 Query 24184 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 24243 |||||||||| |||||||| || |||||||| || ||||| || || || || || || | Sbjct 489487 AAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGC 489428 Query 24244 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG- 24302 | || ||||| || || || || || ||||| |||| || | || || | ||| | Sbjct 489427 CGGAGAAGAAGATACCCTCGACGGCTGCAAAAGCAACGAGGCGCTCCGCAAACGCGGAGT 489368 Query 24303 --CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 |||| ||||| ||||||||||||||||||| || | || || || || | Sbjct 489367 TCTTGTCCGAAATCCAGCGGAGAGCCCAATCGGCCTTCTTCTTAATGCAGGGGATAGTGT 489308 Query 24361 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 24420 | || || | || || | | | | || || | || || || || | | Sbjct 489307 CAATGGCGTCGAACAGGTGCTCGCGCTGCTGGGGGTCCTTGATGTAGGTGTCGATGAGGA 489248 Query 24421 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 24480 || ||| | || || |||||||| || || || || || ||||||||||| | || Sbjct 489247 GAGAGTACGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAGAAACAGCGAG 489188 Query 24481 CCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540 |||| | ||| ||||| | | || |||||| | | ||| || || || || |||| Sbjct 489187 CCTCCGCCGCCTGAACTTCGTTGGAGAACCGTTCTACGAGATTCTCGTTGACAATACCGT 489128 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA--- 24597 | |||||||| || || | || || || |||| ||||| | | Sbjct 489127 CGGATGCTGCAAAGAAGGCAAGGACGTGGGAAATGAAATGACGCTCGTCGTCATTGAGGC 489068 Query 24598 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 24657 | || ||||| |||| || ||| || || | |||| || || | ||||| || || | Sbjct 489067 GGTTGTTCCAGTCATGGAGATCCTTGGAAAGGTCCATCTCCTCTGCCGTCCAGAAGGACG 489008 Query 24658 CCTCTGCCTTTTTATACATATTCCAGAT 24685 ||||||| || || ||||| | |||||| Sbjct 489007 CCTCTGCTTTCTTGTACATTTGCCAGAT 488980 Score = 129 bits (142), Expect = 7e-25 Identities = 339/516 (66%), Gaps = 6/516 (1%) Strand=Plus/Plus Query 24176 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 24235 |||||| ||||||||||| |||||||| || |||||||| || ||||| || || || || Sbjct 487101 TTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGC 487160 Query 24236 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA 24295 || || || || ||||||||||| || || || || || |||| || || || | | Sbjct 487161 GAAGGAGCCGGAGAAGAAAATTCCCTCGACGGCTGCGAATGCAACTAGCCTCTCCGAAAA 487220 Query 24296 ACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 | | | ||| |||||| | ||||| || |||||||| || | ||||| Sbjct 487221 GACAGAATTCTCGTCTGCTATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATGCAAGG 487280 Query 24353 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 24412 |||||||||||||| | ||||| | | || | || || | ||||| || Sbjct 487281 TATTGTCTCTATAGCGTCGAAGAGGAAAGTGCGCTCGACAGGGTCCTTGATGTATGTGTC 487340 Query 24413 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 || | || ||| | || ||||| | |||||||| || || || |||||||| Sbjct 487341 GATGAGGAGGGAGTACGTCTCTGAATGCACATTTTCAATCATGATCTGGAAGCCGTAGAA 487400 Query 24473 ACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCAC 24532 || | ||||| | ||| || || | | || || || | | ||| || || || Sbjct 487401 GCAGCGGGCCTCAGCCGCCTGGACCTCATTGGAGAACCGCTCGACGAGATTCTCGTTGAC 487460 Query 24533 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 24592 || ||||| || || || || || | |||| | | |||| | |||| || Sbjct 487461 AATGCCGTCCGAAGCGGCGAAGAAGGCAAGCACATATGAGAGGAAATGTCGCTCGTTGGG 487520 Query 24593 TGTTAGTTT---ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 24649 || || || ||||||||| | ||| | || | || | |||||| |||||||| Sbjct 487521 CGTGAGCTTGCCATTCCAATCCCAAAGATCATGCGAGAGGTCAATTTCTTCTACTGTCCA 487580 Query 24650 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 ||||| || | ||| | || ||||| | |||||| Sbjct 487581 GAATGACGCTTGTGCTTGCTTGTACATCTGCCAGAT 487616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593712130140480