Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1041 104 2e-17 seq495 95.1 1e-14 >seq1041 Length=164984 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | |||| || |||||||| || ||||| ||||| | | Sbjct 54682 CCACCACGAAGGCGGAGGACAAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCAGAC 54741 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||||||||| |||||||| | || || | ||||| || ||| Sbjct 54742 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGATCAGGGGGA 54801 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | ||| || ||| || ||| Sbjct 54802 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCAGAGGACTCGACC 54861 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || ||||| || || ||||| Sbjct 54862 TCGAGCGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 54908 >seq495 Length=337734 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||||| || || | ||||||| ||||| || || Sbjct 131444 GTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGCTGCTTACCA 131503 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | ||||| | |||||| ||| ||| | ||||||||||| ||| || || Sbjct 131504 GCAAAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATTTTGGCCTTG 131563 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || || | ||| || | |||||||||||||||||| ||||| Sbjct 131564 ACGTTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCGGTCAACGTC 131623 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 131624 TTCACGAAGATCTGCAT 131640 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 20984 CTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATA 21043 |||||| |||||||||||||| | ||||| || | ||||||| ||| ||||| || | Sbjct 130941 CTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAA 131000 Query 21044 AATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTG 21103 ||| || | |||||| || || | || ||||| || |||||| || || | Sbjct 131001 AATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGATCTTCGCCTTGACATT 131060 Query 21104 GCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 | | | || || | ||| ||| | ||||||||||| ||||| | || ||||| Sbjct 131061 GTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCCCGGTAAGGGTCTTGAC 131120 Query 21164 AAATATTTGCAT 21175 ||| |||||||| Sbjct 131121 AAAAATTTGCAT 131132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422252633341616