Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1041 122 8e-23 seq495 114 1e-20 seq606 113 4e-20 seq576 98.7 9e-16 >seq1041 Length=164984 Score = 122 bits (134), Expect = 8e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || || |||||||||||| | |||||| |||||| ||||| Sbjct 54985 GTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTG 55044 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||| ||||||||||| |||||||| |||||||||||||| || || Sbjct 55045 CTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTT 55104 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 | || || | || | |||||| | ||||||||| | || | || ||||| || Sbjct 55105 TGCCTTGACGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGT 55164 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||||||| Sbjct 55165 GAGGGTCTTCACGAAGATCTGCATG 55189 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || || ||||| ||||| ||||| || || Sbjct 54712 GTTGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCC 54771 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| || |||||||| || || |||||||||||||| || || || Sbjct 54772 GCGAAGATGAGGCGTTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 54831 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | | ||||||||||| || | || ||||| |||||||| Sbjct 54832 ACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGAGTC 54891 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 54892 TTGACGAAGATCTGCAT 54908 Score = 107 bits (118), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 118529 CACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCT 118587 ||||||| || | |||||||| || || || || || ||| || ||| || ||||| Sbjct 54470 CACCAAGGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCT 54529 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | ||||| || || ||| | || || |||||||| ||||| || || ||||||||||| Sbjct 54530 CCAGCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCT 54589 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| || || || | || | ||||||| ||||||||||| || | ||| | Sbjct 54590 GAATCTTCGCCTTGACATTGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCT 54649 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || || || ||||||||||| Sbjct 54650 TCCCAGTGAGGGTCTTGACGAAAATCTGCAT 54680 >seq495 Length=337734 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || ||||| ||||| ||| | ||| || ||||||||||| || || Sbjct 131672 GTAGACTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCCTCGAGCTGCTTGCCG 131731 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || |||||||| ||||| || |||||||||||||| || || || Sbjct 131732 GCGAAGATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 131791 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||||| ||| || |||| ||| | ||| ||||| || || || Sbjct 131792 ACATTGTCAATCGTGTCCGACGACTCCACTTCGAGGGTGATCGTCTTGCCCGTGAGGGTC 131851 Query 118722 TTTACAAAAATCTGCATG 118739 || ||||| ||||||||| Sbjct 131852 TTGACAAAGATCTGCATG 131869 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| || || || ||| ||||| ||||| || ||| Sbjct 131444 GTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGCTGCTTACCA 131503 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| |||||||||||||| || || || || |||||||| ||||| || Sbjct 131504 GCAAAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATTTTGGCCTTG 131563 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||||||||| | ||| | || |||||||||| || Sbjct 131564 ACGTTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCGGTCAACGTC 131623 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 131624 TTCACGAAGATCTGCAT 131640 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||||||||| | |||||| |||||| ||||| ||||| Sbjct 131164 GTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCTAGCTGCTTTCCG 131223 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | ||||||||| || || |||||||||||||| || ||| || || Sbjct 131224 GCAAAGATCAAACGCTGCTGGTCCGGGGGTATGCCCTCCTTATCCTGAATCTTCGCCTTC 131283 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||||| || ||||| | || | ||| || ||||| || || Sbjct 131284 ACGTTGTCAATTGTGTCCGAAGATTCAACCTCCAACGTGATCGTCTTTCCGGTGAGTGTC 131343 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 131344 TTGACGAAGATCTGCATG 131361 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 118530 ACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| || ||| || |||||||| || || | ||||| |||||| Sbjct 130923 ACCAAGGTGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTC 130982 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| | |||||||||||||||||||| || || |||||||| || Sbjct 130983 CAACTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTG 131042 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | ||||||| |||||| |||| || | || || Sbjct 131043 GATCTTCGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTT 131102 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || |||||||| |||||| Sbjct 131103 CCCGGTAAGGGTCTTGACAAAAATTTGCATG 131133 >seq606 Length=277477 Score = 113 bits (124), Expect = 4e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 118575 GTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATG 118634 |||||| ||||||||||| || || ||| ||||||||||||| || |||||||| ||| Sbjct 253744 GTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGAGGGATG 253685 Query 118635 CCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCG 118694 ||||||||||| ||| || || || | |||| ||||||| | |||||| || Sbjct 253684 CCCTCCTTGTCCTGAATCTTGGCCTTCACGTTATCGATCGTGTCCGAGGACTCGACTTCC 253625 Query 118695 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | ||| ||||| || || || || || || ||||||||| Sbjct 253624 AACGTGATCGTCTTGCCCGTGAGTGTCTTGACGAATATCTGCATG 253580 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||||||| | || || |||||||||||| Sbjct 253220 GTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGCTG 253161 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| || |||||||| || ||||| || ||||||||||| || || Sbjct 253160 CTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTT 253101 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||| | ||||||||||| || | || ||||| || Sbjct 253100 CGCCTTGACGTTATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGT 253041 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| |||||||| Sbjct 253040 CAAGGTCTTGACAAAGATCTGCAT 253017 >seq576 Length=23070 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||| ||||| || || |||||||||||| | || || ||||||||||| Sbjct 15038 GTGGAGTGTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCGTCCTCGAGCTG 14979 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||| || | || || | | |||| || ||||| || ||||||||| | || || Sbjct 14978 CTTTCCCGCAAATATCAGGCACCGCTGGTCAGGAGGGATACCCTCCTTGGCCTGGATCTT 14919 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| | | |||| ||||| | ||||||||||| | || || |||||||| Sbjct 14918 CGCTTTGATATCATCGATCGTGTCGGACGACTCGACCTCGAGCATGACGGTCTTGCCGGT 14859 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| |||||||| Sbjct 14858 CAAGGTCTTAACAAAGATCTGCAT 14835 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 118575 GTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATG 118634 |||||| ||||||||||| || || | | |||||| |||||||||||||||||| ||| Sbjct 15279 GTGCGCCCGTCCTCGAGCTGCTTGCCCGTGAAGATGATACGCTGCTGATCGGGAGGGATG 15220 Query 118635 CCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCG 118694 | ||||||||| ||| || || || | || | ||||||| | |||||| || Sbjct 15219 CACTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATCGTGTCCGAGGACTCGACTTCC 15160 Query 118695 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| ||| | |||| || | || || | |||||| Sbjct 15159 AACGTAATCGTCTTGTCCGTCAACGTCTGAACGAAGACCTGCAT 15116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433823653394992