Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq495 140 4e-28 seq1041 114 1e-20 seq606 111 2e-19 >seq495 Length=337734 Score = 140 bits (154), Expect = 4e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||||||||| || | ||||| || |||| || |||||||| || ||||| Sbjct 131677 CTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAA 131736 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||||| ||| | || |||||||||| ||| || |||| | Sbjct 131737 GATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 131796 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||| ||||| |||| ||||| || |||||||| || ||||| || Sbjct 131797 GTCAATCGTGTCCGACGACTCCACTTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGAC 131856 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 131857 AAAGATCTGCAT 131868 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| ||||| || || |||| || || || | || || | |||||| || Sbjct 130936 GTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCG 130995 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| ||||| |||||||| |||| ||| | | |||||| ||| ||| || ||| Sbjct 130996 GCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGATCTTCGCCTTG 131055 Query 43107 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 43166 | | | | |||||| ||| || || |||| ||| ||||| || || || || ||| Sbjct 131056 ACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCCCGGTAAGGGTC 131115 Query 43167 TTTACAAAGATTTGCAT 43183 || ||||| |||||||| Sbjct 131116 TTGACAAAAATTTGCAT 131132 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || ||| |||| || |||||||||||||| || Sbjct 131449 CTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGCTGCTTACCAGCAAA 131508 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || |||||||| || | || | | ||||||||| |||||| |||| | Sbjct 131509 GATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATTTTGGCCTTGACGTT 131568 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||||| || || || || | || ||||| ||||| || | |||||| || Sbjct 131569 ATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCGGTCAACGTCTTCAC 131628 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 131629 GAAGATCTGCAT 131640 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | ||||| || | || ||||||||||| || || || Sbjct 131169 CTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCTAGCTGCTTTCCGGCAAA 131228 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||| | || | || |||||| ||| ||| | || | | ||| Sbjct 131229 GATCAAACGCTGCTGGTCCGGGGGTATGCCCTCCTTATCC-TGAATCTTCGCCTTCACGT 131287 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| ||||| || || | |||||| || || || || || ||||| | Sbjct 131288 TGTCAATTGTGTCCGAAGATTCAACCTCCAACGTGATCGTCTTTCCGGTGAGTGTCTTGA 131347 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 131348 CGAAGATCTGCAT 131360 >seq1041 Length=164984 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || |||||||| | ||||| || | || || |||||||| || ||||| Sbjct 54998 TCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTGCTTCCCCGCGAAG 55057 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||||| || | || |||||||||| ||| ||| |||| | Sbjct 55058 ATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTA 55117 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| || || || || | |||||||| |||||||| || ||||| || Sbjct 55118 TCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTCACG 55177 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 55178 AAGATCTGCAT 55188 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || ||||| || || | ||||||||| | || || |||||||| || ||||| Sbjct 54489 CTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCAGCTGCTTGCCCGCGAA 54548 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||||| ||| | | |||||||||| ||| | || | |||| Sbjct 54549 AATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCC-TGAATCTTCGCCTTGACAT 54607 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||| || || || || || ||||| | Sbjct 54608 TGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCCCAGTGAGGGTCTTGA 54667 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 54668 CGAAAATCTGCAT 54680 >seq606 Length=277477 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||||||||| ||||| ||||| || | || || || |||| || || ||||| || Sbjct 253494 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGTTGCTTGCCG 253435 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 ||||| || | |||||||| |||| ||| | || |||||| ||| ||| || ||| Sbjct 253434 GCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGATCTTCGCCTTG 253375 Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 | ||| | | | |||||| || ||||| || | ||||| || |||||||| | ||| Sbjct 253374 A-CGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGCCCGTCAACGT 253316 Query 43166 CTTTACAAAGATTTGCAT 43183 ||| || ||||| ||||| Sbjct 253315 CTTAACGAAGATCTGCAT 253298 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | || || || | || || |||||||| || || || Sbjct 253208 CTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGCTGCTTGCCCGCAAA 253149 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||||| ||| || |||| | Sbjct 253148 GATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTT 253089 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||||| ||| || || |||| ||||||||| ||||| || | ||||| || Sbjct 253088 ATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAGGTCTTGAC 253029 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 253028 AAAGATCTGCAT 253017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571808479509280