Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq495 134 9e-27 seq1041 129 4e-25 seq606 105 4e-18 seq576 96.9 2e-15 >seq495 Length=337734 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | || || ||||| | ||| || ||||| || ||||||||||| Sbjct 131642 CCGCCGCGCAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAA 131701 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || || |||||||||||| || Sbjct 131702 AGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGGTCGGGCGGG 131761 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | |||| || | ||| || || Sbjct 131762 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCCACT 131821 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| ||||| || || |||||||||||||| Sbjct 131822 TCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 131868 Score = 114 bits (126), Expect = 8e-21 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 34184 AGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAAC 34243 ||||| | || || || ||||| ||||| ||||| || || ||| | || |||||| Sbjct 130927 AGGTGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCAAC 130986 Query 34244 TGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATC 34303 |||||||| ||||||||||| |||||||| ||| || | | |||||| || ||| Sbjct 130987 TGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGATC 131046 Query 34304 TTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCG 34363 || ||| | || | | |||| || | ||| ||||| || | ||| ||||| || ||| Sbjct 131047 TTCGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCCCG 131106 Query 34364 GTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || ||||| || ||||| Sbjct 131107 GTAAGGGTCTTGACAAAAATTTGCAT 131132 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| |||| | ||| |||| || | |||||| || || || Sbjct 131450 TCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGCTGCTTACCAGCAAAG 131509 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || || |||||||| || ||| | | |||||||| || ||||| ||| | | Sbjct 131510 ATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTC--CTGGATTTTGGCCTTGACGT 131567 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | |||| |||| || ||||| || | || ||||| |||||||| | || |||| Sbjct 131568 TATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCGGTCAACGTCTTCA 131627 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 131628 CGAAGATCTGCAT 131640 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||| || || || ||| | || Sbjct 131149 AGAACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCC 131208 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || | ||||||||||| ||| | || |||||| || Sbjct 131209 TCTAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCCGGGGGTATGCCCTCCTTATCC 131268 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | ||||| || |||| |||||| || Sbjct 131269 TGAATCTTCGCCTTCACGTTGTCAATTGTGTCCGAAGATTCAACCTCCAACGTGATCGTC 131328 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||||||| || || || ||||||||||| Sbjct 131329 TTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 131360 >seq1041 Length=164984 Score = 129 bits (142), Expect = 4e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| |||||| ||| |||| |||| ||||||||| ||||| Sbjct 54718 TCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAG 54777 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| || ||||| || ||| | || ||||||||| ||||| ||| | || | Sbjct 54778 ATGAGGCGTTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTG 54837 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || ||||| || | ||||||||| ||||| || ||||| || || Sbjct 54838 TCGATGGTGTCAGAGGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGAGTCTTGACG 54897 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 54898 AAGATCTGCAT 54908 Score = 113 bits (124), Expect = 3e-20 Identities = 153/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 34179 GCACCA-GGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 |||||| |||| | |||| || ||||| || || ||||||||||| || | || Sbjct 54469 GCACCAAGGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCC 54528 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| |||||||| || |||||||||||| || | | ||||||||| Sbjct 54529 TCCAGCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCC 54588 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | |||| || | || ||||| || | |||||| || Sbjct 54589 TGAATCTTCGCCTTGACATTGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTC 54648 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || || || |||||||| Sbjct 54649 TTCCCAGTGAGGGTCTTGACGAAAATCTGCAT 54680 Score = 111 bits (122), Expect = 1e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 34180 CACC-AGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGT 34238 |||| ||||| | ||| ||| ||||| |||||||| ||||| || || | || | Sbjct 54978 CACCGAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCT 55037 Query 34239 CCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGG 34298 | | |||||| || ||||| || || |||||||||||| || | || ||||||||| Sbjct 55038 CAAGCTGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCT 55097 Query 34299 CTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTT 34358 |||||| ||| | | | || | |||| || ||||| || | |||||||| | Sbjct 55098 GGATCTTTGCCTTGACGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCT 55157 Query 34359 TGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || ||||| ||||||||||| Sbjct 55158 TGCCCGTGAGGGTCTTCACGAAGATCTGCAT 55188 >seq606 Length=277477 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| ||||| ||| ||| | || || | ||||||||| || || Sbjct 253207 TCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGCTGCTTGCCCGCAAAG 253148 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| || | | ||||||||| ||||| ||| | | Sbjct 253147 ATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTA 253088 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| |||| ||| ||||| || | ||||||||| ||||| || | || || ||| Sbjct 253087 TCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAGGTCTTGACA 253028 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 253027 AAGATCTGCAT 253017 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 34184 AGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAAC 34243 ||||| | || || || ||||| |||||||||||||| || ||| |||| || | Sbjct 253503 AGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGT 253444 Query 34244 TGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATC 34303 |||||||| |||||||| | |||||||| ||| || | || |||||| || ||| Sbjct 253443 TGCTTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGATC 253384 Query 34304 TTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCG 34363 || ||| | | | | |||| || | || || || || | ||||| || ||||| Sbjct 253383 TTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGCCC 253324 Query 34364 GTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || ||||||||||| Sbjct 253323 GTCAACGTCTTAACGAAGATCTGCAT 253298 >seq576 Length=23070 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| ||||| ||| ||| |||| || | |||||| || || || Sbjct 15025 TCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCGTCCTCGAGCTGCTTTCCCGCAAAT 14966 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || || | | ||||||| || | | ||||||| | ||||| ||||| | ||| Sbjct 14965 ATCAGGCACCGCTGGTCAGGAGGGATACCCTCCTTGGCCTGGATCTTC-GCTTTGATATC 14907 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| |||| ||| ||||| || | | ||| ||| |||||||| | || || || Sbjct 14906 ATCGATCGTGTCGGACGACTCGACCTCGAGCATGACGGTCTTGCCGGTCAAGGTCTTAAC 14847 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 14846 AAAGATCTGCAT 14835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323066975826560