Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq606 131 1e-25 seq1041 104 2e-17 seq495 96.9 3e-15 >seq606 Length=277477 Score = 131 bits (144), Expect = 1e-25 Identities = 157/212 (74%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 45127 TACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGT 45185 ||||||| || |||||||||||||||||||||||||||||| || ||| |||| | Sbjct 253508 TACCAAGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTT 253449 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | ||||| || |||||||| ||||| ||||| || ||||| || | |||||||| ||| Sbjct 253448 CGAGTTGCTTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCT 253389 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 || || ||| || | | ||||| | |||||| || | || || |||| Sbjct 253388 GGATCTTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCT 253329 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||||| ||||| || ||||| |||||| Sbjct 253328 TGCCCGTCAACGTCTTAACGAAGATCTGCATG 253297 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||||| |||||||| || |||||||| || ||| |||| || || || Sbjct 253784 GTGGAGGGTGCTTTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGCCCGTCCTCGAGCTG 253725 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | ||||||||||||||||| | |||||||||||| ||| || Sbjct 253724 CTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTT 253665 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | ||||| ||| || |||| || |||||||||||||| Sbjct 253664 GGCCTTCACGTTATCGATCGTGTCCGAGGACTCGACTTCCAACGTGATCGTCTTGCCCGT 253605 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| || || || |||||| Sbjct 253604 GAGTGTCTTGACGAATATCTGCATG 253580 >seq1041 Length=164984 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||| |||||||| ||| || |||| | || || || || Sbjct 54985 GTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTG 55044 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| || | ||||| ||||||||||| | |||||||||||| || || Sbjct 55045 CTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTT 55104 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | |||| | ||| ||||| | || || ||||||||||| Sbjct 55105 TGCCTTGACGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGT 55164 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || |||||||| ||||| |||||| Sbjct 55165 GAGGGTCTTCACGAAGATCTGCATG 55189 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 45128 ACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| || || || ||||||||| || || |||||| ||| ||| | || || Sbjct 54471 ACCAAGGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTC 54530 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||| || || || ||||| || | ||||| |||||||| || | ||||||||||||| Sbjct 54531 CAGCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTG 54590 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | ||||| | ||| ||||| | || |||||||| Sbjct 54591 AATCTTCGCCTTGACATTGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTT 54650 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || || || ||||| Sbjct 54651 CCCAGTGAGGGTCTTGACGAAAATCTGCAT 54680 >seq495 Length=337734 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 45126 ATACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 |||||||| || ||||||||||||||||||||||| ||||| || ||| | || Sbjct 130921 ATACCAAGGTGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCC 130980 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || || |||||||| || | ||||| || ||||| || | |||||||| ||| Sbjct 130981 TCCAACTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCC 131040 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | ||||| ||| || || | ||||| ||| Sbjct 131041 TGGATCTTCGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTC 131100 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || ||||| ||||| ||||||||| Sbjct 131101 TTCCCGGTAAGGGTCTTGACAAAAATTTGCATG 131133 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 45126 ATACCAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 ||||| || || || || ||||||||| ||||||||||| || || |||| Sbjct 131429 ATACCGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCC 131488 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || || || || | ||||| || || || || | ||| ||||||||| Sbjct 131489 TCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCC 131548 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||| || | | |||| | ||| ||||| | |||||| ||| Sbjct 131549 TGGATTTTGGCCTTGACGTTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTC 131608 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| |||| |||||||| ||||| ||||| Sbjct 131609 TTGCCGGTCAACGTCTTCACGAAGATCTGCAT 131640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395069056086796