Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq993 203 3e-47 seq506 165 7e-36 seq495 127 2e-24 seq1041 114 1e-20 seq606 91.5 1e-13 >seq993 Length=568693 Score = 203 bits (224), Expect = 3e-47 Identities = 382/561 (68%), Gaps = 3/561 (1%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| | ||| |||| || || ||||| || |||||| | ||||| Sbjct 487616 ATCTGGCAGATGTACAAGCAAGCACAAGCGTCATTCTGGACAGTAGAAGAAATTGACCTC 487557 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || | ||||| | |||||| || | |||| ||| || |||| | | Sbjct 487556 TCGCATGATCTTTGGGATTGGAATGGCAAGCTCACGCCCAACGAGCGACATTTCCTCTCA 487497 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 | ||| | || || |||||||| || || || ||||| ||||||||| | ||||| | Sbjct 487496 TATGTGCTTGCCTTCTTCGCCGCTTCGGACGGCATTGTCAACGAGAATCTCGTCGAGCGG 487437 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || | || || || | | | ||||| | ||||| ||||| || || | ||| Sbjct 487436 TTCTCCAATGAGGTCCAGGCGGCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATT 487377 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 ||||| ||||||||||| | ||| || || |||||||| || ||| | |||||| | | Sbjct 487376 GAAAATGTGCATTCAGAGACGTACTCCCTCCTCATCGACACATACATCAAGGACCCTGTC 487317 Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAG 57926 ||| | || ||| |||| || || ||||| || ||| |||||||| || Sbjct 487316 GAGCGCACTTTCCTCTTCGACGCTATAGAGACAATACCTTGCATCAAGAAGAAGGCTGAC 487257 Query 57927 TGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTC 57986 ||| | | |||||| | || | | || | ||||||||| | || ||| Sbjct 487256 TGGGCGTTACGCTGGATAGCAGACGAGAATTCTGTCTTTTCGGAGAGGCTAGTTGCATTC 487197 Query 57987 GCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAA 58046 || |||||||| || || ||||| || ||| ||| || | || || ||| | ||||| Sbjct 487196 GCAGCCGTCGAGGGAATTTTCTTCTCCGGCTCCTTCGCCTCTATCTTCTGGCTCAAGAAG 487137 Query 58047 CGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTC 58106 || || || ||||||||||| |||||| ||||| | || || ||||| ||||| | Sbjct 487136 CGTGGTCTCATGCCCGGCCTCACGTTTTCGAACGAACTCATCTCCCGCGATGAGGGCATG 487077 Query 58107 CATACTGATTTTGCGTGCCTA 58127 ||||| || ||||| |||||| Sbjct 487076 CATACCGACTTTGCCTGCCTA 487056 Score = 176 bits (194), Expect = 4e-39 Identities = 379/563 (67%), Gaps = 13/563 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| || ||||| || || || ||||| | || || | ||||| Sbjct 488980 ATCTGGCAAATGTACAAGAAAGCAGAGGCGTCCTTCTGGACGGCAGAGGAGATGGACCTT 489039 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| || ||| | || |||| || ||| | |||| ||| Sbjct 489040 TCCAAGGATCTCCATGACTGGAACAACCGCCTCAATGACGACGAGCGTCATTTCATTTCC 489099 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || || || |||||||| |||||||| ||||||||| | || ||| | Sbjct 489100 CACGTCCTTGCCTTCTTTGCAGCATCCGACGGTATTGTCAACGAGAATCTCGTAGAACGG 489159 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || | ||||| || | | ||||||| | || || ||||| || || | || Sbjct 489160 TTCTCCAACGAAGTTCAGGCGGCGGAGGCTCGCTGTTTCTACGGTTTCCAGATTATGATG 489219 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || | ||| || || |||||||| || ||| | |||||| | | Sbjct 489220 GAGAACATTCACTCCGAGACGTACTCTCTCCTCATCGACACCTACATCAAGGACCCCCAG 489279 Query 57867 GAGAAACGTAGAC-TGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 || || || ||||| |||| || || || || ||| || |||||||| || Sbjct 489280 CAGCG-CGAGCACCTGTTCGACGCCATTGACACTATCCCCTGCATTAAGAAGAAGGCCGA 489338 Query 57926 GTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 ||| | || ||||| | ||| | || |||| || ||| | || | | Sbjct 489339 TTGGGCTCTCCGCTGGATTTCGGACAAGAACTCCG----CGTTTGCGGAGCGCCTCGTTG 489394 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 | || || |||||||| ||||| ||||| || ||| ||| || | || || ||| | | Sbjct 489395 CTTTTGCAGCCGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCTATCTTCTGGCTCA 489454 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||| || || || ||||||||||| |||||| ||||| | || || ||||| |||| Sbjct 489455 AGAAGCGTGGTCTCATGCCCGGCCTCACGTTTTCGAACGAACTCATCTCCCGCGATGAGG 489514 Query 58102 GTCTCCATACTGATTTTGCGTGC 58124 | | ||||| || || || ||| Sbjct 489515 GCATGCATACCGACTTCGCTTGC 489537 >seq506 Length=319592 Score = 165 bits (182), Expect = 7e-36 Identities = 263/375 (70%), Gaps = 7/375 (2%) Strand=Plus/Minus Query 22505 GTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATC 22564 ||| | || ||||| |||| ||||| ||||| ||||| ||||| || || ||||| Sbjct 219866 GTGTAGGGCTCGAAGCATTCGTTGTTGCCCAGAATCTGGCTAGTCGACGCAGTAGGCATA 219807 Query 22565 GGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGAC 22624 || |||| ||| |||||||| ||||| || | | | || || |||||| ||| | Sbjct 219806 GGAGCCAGCAGGAGCGAGTTCCTCAAACCATATTGGGCAACCTTCGCCTTGAGACTCGCC 219747 Query 22625 CAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GC 22682 || ||||| || || | ||||| ||| ||||||||||||| || | | ||| || Sbjct 219746 CAATCCCAGAGGTCTGTTGGCGTGACAC---CCCACATATCGTACTGGAGCTTGCCCTGC 219690 Query 22683 GACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC 22742 ||| ||||||||||| | |||||| |||||||| || | | ||| | ||||||| Sbjct 219689 GAC--GCCGGGCTGCCCTGGTACGTCTCGTACGGGCCCTGCTCCTTGGCCATCTCGCAGC 219632 Query 22743 TCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGG 22802 ||||||| | || ||| || || ||||||||||| | | ||||| | || Sbjct 219631 TCGCCTCGACTGCAGCGTGGTAGATGGTCTCGAAGATCTGCAGGTTCAGCTTACGTGCCT 219572 Query 22803 CGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTA 22862 |||| ||| | |||| |||| | || |||||||||||| | ||||| || || | Sbjct 219571 CGACCGAGTCGAATGGCAGCCGCAGCGCCATGAACGCGTCCGCGAGGCCCTGCACACCGA 219512 Query 22863 TACCGATCGGTCGGT 22877 | || ||||| |||| Sbjct 219511 TGCCAATCGGACGGT 219497 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 ||||||||||| ||||| | || ||||| || || || ||||| ||||||||||| || Sbjct 218921 AAAAGATCCGGAATCCACAATGCATAGAAGAGGTCACGAGCGCGAACCTCCTCTTTACCA 218862 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| | ||| | || || || ||||| |||||||| ||||| ||||| | | Sbjct 218861 TGGTTCTTACGAAGATCGAGGAACTCGAAGACGTCGGCATGCCAAGGCTCTAGGTAGATG 218802 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || || || || | ||| ||||| ||||| ||||||||||||||||| | ||| Sbjct 218801 GCGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTCGAATCGTAG 218742 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGA 23565 || | ||||| || |||| ||||| || Sbjct 218741 ACACGGAGCATAGGAACGATGCCGTTCGA 218713 Score = 82.4 bits (90), Expect = 7e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 22107 TGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCG 22166 |||| || || |||| || || | |||||| || || || || || |||||||||| Sbjct 220318 TGTCGACAGTGAACTTGATCGCCTGTGCGGCGGGGCGCGTACGCAGGTAGTACATGCCCG 220259 Query 22167 TCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCA 22226 ||||||| ||| |||||||| |||| || || || |||||||| || | ||||| Sbjct 220258 TCTTCAGGCCCTTCTTCCACCCGTAGAAGTGCATGCTCGTCAATTGACCCATAGTCGGCG 220199 Query 22227 AGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | || || ||| |||| ||||| ||| ||| ||||| || || || || || Sbjct 220198 CCTGCAGGTGCACGTTGAGGGACTGTGACTGGCAGATGAACGCGCCGCGGTCCGCCGC 220141 >seq495 Length=337734 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || || ||||| ||||||||| |||| || || |||| Sbjct 131869 CATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAAGTGGAGTCGTC 131810 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||| ||| | ||||||||||| Sbjct 131809 GGACACGATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 131750 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| ||||| ||||| ||||| ||| | || ||| | ||| | ||| || || Sbjct 131749 GCAGCGCCTAATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACTCTTTCCGACTACAA 131690 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || ||||| || || ||| | ||| | ||||||| Sbjct 131689 TATTCAGAAGGAGTCTACCCTTCACCTTGTCCTTCGTCTGCGCGGCGGTA 131640 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || ||||| || || || || || || || |||| || || |||| Sbjct 131133 CATGCAAATTTTTGTCAAGACCCTTACCGGGAAGACCATTACGCTCGAAGTCGAGTCGTC 131074 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || || ||| ||||| || | |||||||| || Sbjct 131073 GGACACGATTGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGGGATCCCGCCCGATCA 131014 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || ||||| ||||| |||||||| || Sbjct 131013 GCAGCGTCTCATTTTCGCCGGCAAGCAGTTGGAGGA 130978 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || || ||| | || || || | ||| Sbjct 131640 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCTTCC 131581 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | ||| |||||||||||| | || || || ||| Sbjct 131580 GACACGATCGATAACGTCAAGGCCAAAATCCAGGACAAGGAAGGTATTCCCCCGGATCAG 131521 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| | || ||| || || || || ||| Sbjct 131520 CAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGGCGTACGTTGTCGGACTACAAC 131461 Query 31373 ATTCAAAAAGAATCGACTCTTCATCT-GGTA 31402 || || || || || || ||||| || |||| Sbjct 131460 ATCCAGAAGGAGTCTACCCTTCACCTCGGTA 131430 >seq1041 Length=164984 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || || |||||||| |||| || || | || Sbjct 54680 ATGCAGATTTTCGTCAAGACCCTCACTGGGAAGACGATCACGCTCGAGGTCGAGTCTTCG 54621 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||| || | |||||||||||| Sbjct 54620 GACACGATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATTCCGCCCGACCAG 54561 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| ||| |||| || | |||| || ||| ||||| Sbjct 54560 CAGCGCCTTATTTTCGCGGGCAAGCAGCTGGAGGATGGTCGGACTCTGTCCGACTATAAT 54501 Query 31373 ATTCAAAAAGAATCGACTCTTCATCT 31398 || || || || || |||||||| || Sbjct 54500 ATCCAGAAGGAGTCTACTCTTCACCT 54475 Score = 102 bits (112), Expect = 7e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || ||||| | || || || | || Sbjct 55189 CATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCTTC 55130 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| | || | ||||| || ||| | ||||||||| ||| | || ||||||| Sbjct 55129 CGACACCATTGATAACGTCAAGGCAAAGA-TCCAGGACAAGGAGGGCATTCCTCCCGACC 55071 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || ||||| || || ||| | || || | ||| | |||||| | Sbjct 55070 AGCAGCGTCTTATCTTCGCGGGGAAGCAGCTTGAGGATGGTCGCACTCTTTCCGATTACA 55011 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCT 31398 |||| || || ||||| ||||| || || Sbjct 55010 ACATCCAGAAGGAATCCACTCTCCACCT 54983 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| ||||| || ||||| |||| || || | || Sbjct 54908 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCCTCT 54849 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| ||| | || || || ||| Sbjct 54848 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 54789 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 || || || || ||||| ||||| ||| |||| ||| Sbjct 54788 CAACGCCTCATCTTCGCGGGCAAGCAGCTGGAGGAC 54753 >seq606 Length=277477 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| ||||| || ||||| |||| || || ||||| Sbjct 253017 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCGTCC 253076 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| || | || || |||||| Sbjct 253077 GACACGATCGATAACGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 253136 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || ||||| ||| | || || | || | |||||| ||| Sbjct 253137 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGATGGTCGTACGCTCTCCGATTACAAC 253196 Query 31373 ATTCAAAAAGAATCGACTCTTCATCT-GGTAC 31403 || || || || ||||| || || || ||||| Sbjct 253197 ATCCAGAAGGAGTCGACGCTCCACCTCGGTAC 253228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445759290025920