Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq993 168 8e-37 >seq993 Length=568693 Score = 168 bits (186), Expect = 8e-37 Identities = 379/568 (67%), Gaps = 6/568 (1%) Strand=Plus/Minus Query 33571 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAG 33630 |||| | ||| || ||||| ||| |||| ||||| || | || | |||||| | Sbjct 489547 TAAAGAGCAAGCAAGCGAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCG 489488 Query 33631 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33690 |||||||||| |||||||| || |||||||| || ||||| || || || ||||| || | Sbjct 489487 AAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGC 489428 Query 33691 CGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG- 33749 |||| |||||||| || || || || ||||| |||| || | ||| || | ||| | Sbjct 489427 CGGAGAAGAAGATACCCTCGACGGCTGCAAAAGCAACGAGGCGCTCCGCAAACGCGGAGT 489368 Query 33750 --CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 |||| ||||| ||||||||||||||||||| || | || || || || | Sbjct 489367 TCTTGTCCGAAATCCAGCGGAGAGCCCAATCGGCCTTCTTCTTAATGCAGGGGATAGTGT 489308 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | ||||| | || || | | | | || || | || || ||||| | | Sbjct 489307 CAATGGCGTCGAACAGGTGCTCGCGCTGCTGGGGGTCCTTGATGTAGGTGTCGATGAGGA 489248 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 || ||| | || || |||||||| || || ||||| || ||||||||||| | || Sbjct 489247 GAGAGTACGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAGAAACAGCGAG 489188 Query 33928 CCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT 33987 |||| | ||| ||||| | | || |||||| | | ||| || || || || || | Sbjct 489187 CCTCCGCCGCCTGAACTTCGTTGGAGAACCGTTCTACGAGATTCTCGTTGACAATACCGT 489128 Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA--- 34044 | |||||||| || || | || || || |||| ||||| | | Sbjct 489127 CGGATGCTGCAAAGAAGGCAAGGACGTGGGAAATGAAATGACGCTCGTCGTCATTGAGGC 489068 Query 34045 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 34104 | || ||||| |||| || ||| || || | |||| || || | ||||| || || | Sbjct 489067 GGTTGTTCCAGTCATGGAGATCCTTGGAAAGGTCCATCTCCTCTGCCGTCCAGAAGGACG 489008 Query 34105 CCTCTGCCTTTTTATACATATTCCAGAT 34132 ||||||| || || ||||| | |||||| Sbjct 489007 CCTCTGCTTTCTTGTACATTTGCCAGAT 488980 Score = 125 bits (138), Expect = 9e-24 Identities = 338/516 (66%), Gaps = 6/516 (1%) Strand=Plus/Plus Query 33623 TTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGC 33682 |||||| ||||||||||| |||||||| || |||||||| || ||||| || || || || Sbjct 487101 TTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGC 487160 Query 33683 GAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA 33742 ||| || ||||| ||||| ||||| || || || || || |||| || ||||| | | Sbjct 487161 GAAGGAGCCGGAGAAGAAAATTCCCTCGACGGCTGCGAATGCAACTAGCCTCTCCGAAAA 487220 Query 33743 ACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33799 | | | ||| |||||| | ||||| || |||||||| || | ||||| Sbjct 487221 GACAGAATTCTCGTCTGCTATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATGCAAGG 487280 Query 33800 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATC 33859 || || ||||| || | ||||| | | || | || || | || || || Sbjct 487281 TATTGTCTCTATAGCGTCGAAGAGGAAAGTGCGCTCGACAGGGTCCTTGATGTATGTGTC 487340 Query 33860 GATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919 ||| | || ||| | || ||||| | |||||||| ||||| || |||||||| Sbjct 487341 GATGAGGAGGGAGTACGTCTCTGAATGCACATTTTCAATCATGATCTGGAAGCCGTAGAA 487400 Query 33920 ACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 33979 || | ||||| | ||| || || | | || || || | | ||| || || || Sbjct 487401 GCAGCGGGCCTCAGCCGCCTGGACCTCATTGGAGAACCGCTCGACGAGATTCTCGTTGAC 487460 Query 33980 TATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 34039 || || || || || || || || | |||| | | |||| | |||| || Sbjct 487461 AATGCCGTCCGAAGCGGCGAAGAAGGCAAGCACATATGAGAGGAAATGTCGCTCGTTGGG 487520 Query 34040 TGTTAGTTT---ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 34096 || || || ||||||||| | ||| | || | || | |||||| |||||||| Sbjct 487521 CGTGAGCTTGCCATTCCAATCCCAAAGATCATGCGAGAGGTCAATTTCTTCTACTGTCCA 487580 Query 34097 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 ||||| || | ||| | || ||||| | |||||| Sbjct 487581 GAATGACGCTTGTGCTTGCTTGTACATCTGCCAGAT 487616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629807554409280