Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq993 143 4e-29 >seq993 Length=568693 Score = 143 bits (158), Expect = 4e-29 Identities = 342/516 (66%), Gaps = 6/516 (1%) Strand=Plus/Plus Query 36199 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 36258 |||||| ||||||||||| |||||||| || |||||||| || ||||| || || || || Sbjct 487101 TTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGC 487160 Query 36259 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 36318 || || || || ||||||||||| || || || || || |||| || ||||| | | Sbjct 487161 GAAGGAGCCGGAGAAGAAAATTCCCTCGACGGCTGCGAATGCAACTAGCCTCTCCGAAAA 487220 Query 36319 ACCGGCACT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 | | | | ||| |||||| | ||||| || |||||||| || | ||||| Sbjct 487221 GACAGAATTCTCGTCTGCTATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATGCAAGG 487280 Query 36376 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 36435 |||||||||||||| | ||||| | | || | || || | ||||| || Sbjct 487281 TATTGTCTCTATAGCGTCGAAGAGGAAAGTGCGCTCGACAGGGTCCTTGATGTATGTGTC 487340 Query 36436 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 || | || ||| | || ||||| | |||||||| || || || |||||||| Sbjct 487341 GATGAGGAGGGAGTACGTCTCTGAATGCACATTTTCAATCATGATCTGGAAGCCGTAGAA 487400 Query 36496 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 36555 || | ||||| | ||| || || | | || || || | | ||| || || || Sbjct 487401 GCAGCGGGCCTCAGCCGCCTGGACCTCATTGGAGAACCGCTCGACGAGATTCTCGTTGAC 487460 Query 36556 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGG 36615 || ||||| || || || || || | |||| | | |||| | ||||| || Sbjct 487461 AATGCCGTCCGAAGCGGCGAAGAAGGCAAGCACATATGAGAGGAAATGTCGCTCGTTGGG 487520 Query 36616 TGTTAGTTT---ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 36672 || || || ||||||||| | ||| | || | || | |||||| |||||||| Sbjct 487521 CGTGAGCTTGCCATTCCAATCCCAAAGATCATGCGAGAGGTCAATTTCTTCTACTGTCCA 487580 Query 36673 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 36708 ||||| || | ||| | || ||||| | |||||| Sbjct 487581 GAATGACGCTTGTGCTTGCTTGTACATCTGCCAGAT 487616 Score = 138 bits (152), Expect = 1e-27 Identities = 376/572 (66%), Gaps = 14/572 (2%) Strand=Plus/Minus Query 36147 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 36206 |||| | ||| || ||||| ||| || | ||||| || | || | |||||| | Sbjct 489547 TAAAGAGCAAGCAAGCGAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCG 489488 Query 36207 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 36266 |||||||||| |||||||| || |||||||| || ||||| || || || || || || | Sbjct 489487 AAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGC 489428 Query 36267 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 36326 | || ||||| || || || || || ||||| |||| || | ||| || ||| | | Sbjct 489427 CGGAGAAGAAGATACCCTCGACGGCTGCAAAAGCAACGAGGCGCTCCGCA-AACGCGGAG 489369 Query 36327 TGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381 | || ||| ||||| ||||||||||||||||||| || | || || || || Sbjct 489368 T-TCTTGTCCGAAATCCAGCGGAGAGCCCAATCGGCCTTCTTCTTAATGCAGGGGATAGT 489310 Query 36382 CTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA 36441 || || || | || || | | | | || || | || || || || | Sbjct 489309 GTCAATGGCGTCGAACAGGTGCTCGCGCTGCTGGGGGTCCTTGATGTAGGTGTCGATGAG 489250 Query 36442 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCT 36501 ||| ||| | || || |||||||| || || || || || ||||||||||| | Sbjct 489249 GAGAGAGTACGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAGAAACAGCG 489190 Query 36502 AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCC 36561 |||||| | ||| ||||| | | || |||||| | | ||| || || || || || Sbjct 489189 AGCCTCCGCCGCCTGAACTTCGTTGGAGAACCGTTCTACGAGATTCTCGTTGACAATACC 489130 Query 36562 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-----TTGGT 36616 ||| |||||||| || || | || || || |||| |||| ||| Sbjct 489129 GTCGGATGCTGCAAAGAAGGCAAGGACGTGGGAAATGAAATGACGCTCGTCGTCATTGAG 489070 Query 36617 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 36676 | | || ||||| |||| || ||| || || | |||| || || | ||||| || Sbjct 489069 G--CGGTTGTTCCAGTCATGGAGATCCTTGGAAAGGTCCATCTCCTCTGCCGTCCAGAAG 489012 Query 36677 GATGCCTCTGCCTTTTTATACATATTCCAGAT 36708 || |||||||| || || ||||| | |||||| Sbjct 489011 GACGCCTCTGCTTTCTTGTACATTTGCCAGAT 488980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658162302143840