Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq993 167 3e-36 >seq993 Length=568693 Score = 167 bits (184), Expect = 3e-36 Identities = 382/571 (67%), Gaps = 12/571 (2%) Strand=Plus/Minus Query 49949 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 50008 |||| | ||| || ||||| ||| |||| ||||| || | || |||||||| | Sbjct 489547 TAAAGAGCAAGCAAGCGAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCG 489488 Query 50009 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACC 50068 |||||||||| |||||||| || |||||||| || ||||| || || || || || || | Sbjct 489487 AAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGC 489428 Query 50069 CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC 50128 | || |||||||| || || || || ||||| ||||| || | ||| || ||| ||| Sbjct 489427 CGGAGAAGAAGATACCCTCGACGGCTGCAAAAGCAACGAGGCGCTCCGCA-AAC--GCGG 489371 Query 50129 TG-TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 50182 | || ||| ||||| ||||||||||||||||||| || | || || || | Sbjct 489370 AGTTCTTGTCCGAAATCCAGCGGAGAGCCCAATCGGCCTTCTTCTTAATGCAGGGGATAG 489311 Query 50183 TTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA 50242 | || ||||| | || || | | | | || || | || || ||||| | Sbjct 489310 TGTCAATGGCGTCGAACAGGTGCTCGCGCTGCTGGGGGTCCTTGATGTAGGTGTCGATGA 489251 Query 50243 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 50302 ||| ||| | || || |||||||| || || ||||| || ||||||||||| | Sbjct 489250 GGAGAGAGTACGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAGAAACAGC 489191 Query 50303 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTC 50362 |||||| | ||| ||||| | | || ||||| | | ||| || || || || | Sbjct 489190 GAGCCTCCGCCGCCTGAACTTCGTTGGAGAACCGTTCTACGAGATTCTCGTTGACAATAC 489131 Query 50363 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA 50422 |||| |||||||| || || | || || || ||||| |||| | | | Sbjct 489130 CGTCGGATGCTGCAAAGAAGGCAAGGACGTGGGAAATGAAATGACGCTCGTCGTCATTGA 489071 Query 50423 ---GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATG 50479 | || ||||| |||| || ||| || || | || | || || | ||||| || | Sbjct 489070 GGCGGTTGTTCCAGTCATGGAGATCCTTGGAAAGGTCCATCTCCTCTGCCGTCCAGAAGG 489011 Query 50480 ATGCCTCTGCCTTTTTATACATATTCCAGAT 50510 | |||||||| || || ||||| | |||||| Sbjct 489010 ACGCCTCTGCTTTCTTGTACATTTGCCAGAT 488980 Score = 143 bits (158), Expect = 4e-29 Identities = 347/521 (67%), Gaps = 6/521 (1%) Strand=Plus/Plus Query 49996 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 50055 || |||||||| ||||||||||| |||||||| || |||||||| || ||||| || || Sbjct 487096 ATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATA 487155 Query 50056 GACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCT 50115 || || || || || || ||||| ||||| || || || || || ||||| || ||||| Sbjct 487156 GAGGCGAAGGAGCCGGAGAAGAAAATTCCCTCGACGGCTGCGAATGCAACTAGCCTCTCC 487215 Query 50116 CCATA-ACTG-GCGCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 50172 | | || | || ||| |||||| | ||||| || |||||||| || | Sbjct 487216 GAAAAGACAGAATTCTCGTCTGCTATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATG 487275 Query 50173 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 50232 ||||| || || ||||| || | ||||| | | || | || || | || Sbjct 487276 CAAGGTATTGTCTCTATAGCGTCGAAGAGGAAAGTGCGCTCGACAGGGTCCTTGATGTAT 487335 Query 50233 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 50292 || ||||| | || ||| | || ||||| | |||||||| ||||| || ||| Sbjct 487336 GTGTCGATGAGGAGGGAGTACGTCTCTGAATGCACATTTTCAATCATGATCTGGAAGCCG 487395 Query 50293 TAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCA 50352 ||||| || | ||||| | ||| || || | | || || || | | ||| || Sbjct 487396 TAGAAGCAGCGGGCCTCAGCCGCCTGGACCTCATTGGAGAACCGCTCGACGAGATTCTCG 487455 Query 50353 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCG 50412 || || || ||||| || || || || || | |||| | | |||||| ||| Sbjct 487456 TTGACAATGCCGTCCGAAGCGGCGAAGAAGGCAAGCACATATGAGAGGAAATGTCGCTCG 487515 Query 50413 TTGGGTGTTAGTTT---ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 50469 ||||| || || || ||||||||| | ||| | || | || | |||||| ||| Sbjct 487516 TTGGGCGTGAGCTTGCCATTCCAATCCCAAAGATCATGCGAGAGGTCAATTTCTTCTACT 487575 Query 50470 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 50510 ||||| ||||| || | ||| | || ||||| | |||||| Sbjct 487576 GTCCAGAATGACGCTTGTGCTTGCTTGTACATCTGCCAGAT 487616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718257343612640