Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq495 100 2e-16 seq606 96.9 3e-15 >seq495 Length=337734 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| ||||||||||| || | || || || || | || || | || ||||| || Sbjct 130930 TGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCAACTGC 130989 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAAC 43026 |||||||| ||||| | ||||| ||||||| ||| | || || || || |||| | Sbjct 130990 TTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGATCTTC 131049 Query 43027 TCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTT 43086 | ||||| || ||| ||||| | |||||| || | ||| || || || ||||| Sbjct 131050 GCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCCCGGTA 131109 Query 43087 AGAGTTTTCACAAAAATTTGCAT 43109 || || || |||||||||||||| Sbjct 131110 AGGGTCTTGACAAAAATTTGCAT 131132 >seq606 Length=277477 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| ||||||||||| || | ||||| ||||| | ||||| |||| || | ||| Sbjct 253500 TGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGTTGC 253441 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAAC 43026 |||||||| |||||||| ||||| ||||||| ||| | || || || || |||| | Sbjct 253440 TTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGATCTTC 253381 Query 43027 TCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTT 43086 | ||||| || | | ||||| || ||| || || | || ||||| || || || Sbjct 253380 GCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGCCCGTC 253321 Query 43087 AGAGTTTTCACAAAAATTTGCAT 43109 | || || || || || ||||| Sbjct 253320 AACGTCTTAACGAAGATCTGCAT 253298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381363669226008