Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq993 170 3e-37 >seq993 Length=568693 Score = 170 bits (188), Expect = 3e-37 Identities = 383/571 (67%), Gaps = 12/571 (2%) Strand=Plus/Minus Query 42054 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGG 42113 |||| | ||| || ||||| ||| |||| |||||||| | || | |||||| | Sbjct 489547 TAAAGAGCAAGCAAGCGAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCG 489488 Query 42114 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATC 42173 |||||||||| |||||||| || |||||||| || ||||| || ||||| || || || | Sbjct 489487 AAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGC 489428 Query 42174 CAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 42233 | || |||||||| || || || || ||||| |||| || | ||| || ||| | | Sbjct 489427 CGGAGAAGAAGATACCCTCGACGGCTGCAAAAGCAACGAGGCGCTCCGCA-AACGCGGAG 489369 Query 42234 TGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288 | || ||| ||||| ||||||||||||||||||| || | || || || || Sbjct 489368 T-TCTTGTCCGAAATCCAGCGGAGAGCCCAATCGGCCTTCTTCTTAATGCAGGGGATAGT 489310 Query 42289 TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAA 42348 || ||||| | || || | | | | || || | || || ||||| | Sbjct 489309 GTCAATGGCGTCGAACAGGTGCTCGCGCTGCTGGGGGTCCTTGATGTAGGTGTCGATGAG 489250 Query 42349 AAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 42408 ||| ||| | || || |||||||| || || ||||| || ||||||||||| | Sbjct 489249 GAGAGAGTACGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAGAAACAGCG 489190 Query 42409 GGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCC 42468 ||||| | |||| ||||| | | || ||||| | | ||| ||||| || || || Sbjct 489189 AGCCTCCGCCGCCTGAACTTCGTTGGAGAACCGTTCTACGAGATTCTCGTTGACAATACC 489130 Query 42469 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA 42528 ||| |||||||| || || | || || || |||| |||| || || | Sbjct 489129 GTCGGATGCTGCAAAGAAGGCAAGGACGTGGGAAATGAAATGACGCTCGT-CGTCATTGA 489071 Query 42529 ----TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584 || ||||| |||| || ||| || || | || | || ||| ||||||| || | Sbjct 489070 GGCGGTTGTTCCAGTCATGGAGATCCTTGGAAAGGTCCATCTCCTCTGCCGTCCAGAAGG 489011 Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGAT 42615 | || ||||| || || ||||| | |||||| Sbjct 489010 ACGCCTCTGCTTTCTTGTACATTTGCCAGAT 488980 Score = 154 bits (170), Expect = 2e-32 Identities = 360/542 (66%), Gaps = 6/542 (1%) Strand=Plus/Plus Query 42080 TGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 42139 |||| |||||||| | || | |||||| ||||||||||| |||||||| || ||| Sbjct 487075 TGCATGCCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGACCA 487134 Query 42140 CGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCC 42199 ||||| || ||||| || ||||| || || || || || ||||| ||||| || || || Sbjct 487135 CGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAAATTCCCTCGACGGCT 487194 Query 42200 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGTATCCACTTTTGAGCC 42256 || || |||| || ||||| | | | | | | ||| |||||| | ||| Sbjct 487195 GCGAATGCAACTAGCCTCTCCGAAAAGACAGAATTCTCGTCTGCTATCCAGCGTAACGCC 487254 Query 42257 CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttt 42316 || || |||||||| || | ||||| || || ||||| || | ||||| | | Sbjct 487255 CAGTCAGCCTTCTTCTTGATGCAAGGTATTGTCTCTATAGCGTCGAAGAGGAAAGTGCGC 487314 Query 42317 tCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || | || || | ||||| ||||| | || ||| | |||||||| | ||| Sbjct 487315 TCGACAGGGTCCTTGATGTATGTGTCGATGAGGAGGGAGTACGTCTCTGAATGCACATTT 487374 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAA 42436 ||||| ||||| || |||||||| || | |||||| | |||| || || | | Sbjct 487375 TCAATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCAGCCGCCTGGACCTCATTGGAG 487434 Query 42437 AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 42496 || || || | | ||| ||||| || || ||||| || || || || || | ||| Sbjct 487435 AACCGCTCGACGAGATTCTCGTTGACAATGCCGTCCGAAGCGGCGAAGAAGGCAAGCACA 487494 Query 42497 TGTTTTATAAAATATTTTTCGTCCGGTGTTAATTT---ATTCCAATCATTGATATCTTTA 42553 | | | |||| | |||| || || | || ||||||||| | ||| | Sbjct 487495 TATGAGAGGAAATGTCGCTCGTTGGGCGTGAGCTTGCCATTCCAATCCCAAAGATCATGC 487554 Query 42554 GATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAG 42613 || | || | ||||||||| ||||| ||||| |||| ||| | || ||||| | |||| Sbjct 487555 GAGAGGTCAATTTCTTCTACTGTCCAGAATGACGCTTGTGCTTGCTTGTACATCTGCCAG 487614 Query 42614 AT 42615 || Sbjct 487615 AT 487616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671128495329760