Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq993 168 1e-36 >seq993 Length=568693 Score = 168 bits (186), Expect = 1e-36 Identities = 370/545 (68%), Gaps = 16/545 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| || || |||| ||||| ||||||| || ||| | || || Sbjct 488980 ATCTGGCAAATGTACAAGAAAGCAGAGGCGTCCTTCTGGACGGCAGAGGAGATGGACCTT 489039 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || | || ||| | | || | | ||| ||||| | || || || Sbjct 489040 TCCAAGGATCTCCATGACTGGAACAACCGCCTCAATGACGACGAGCGTCATTTCATTTCC 489099 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | ||||||||||| | ||||| || || |||||||| ||||| || || ||| Sbjct 489100 CACGTCCTTGCCTTCTTTGCAGCATCCGACGGTATTGTCAACGAGAATCTCGTAGA-ACG 489158 Query 125198 ATTCTCTCAAG-AGTTGACCATTC--CAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 ||||| | | |||| || | | |||| ||| || || ||||| ||||| || | Sbjct 489159 GTTCTCCAACGAAGTT---CAGGCGGCGGAGG-CTCGCTGTTTCTACGGTTTCCAGATTA 489214 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| |||||| | ||||| || | ||||||| || || |||| ||||| || | Sbjct 489215 TGATGGAGAACATTCACTCCGAGACGTACTCTCTCCTCATCGACACCTACATCAAGGACC 489274 Query 125314 C---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 | ||| || | ||| || || |||| || ||||| | || | || || | Sbjct 489275 CCCAGCAGCGCGAGCAC---CTGTTCGACGCCATTGACACTATCCCCTGCATTAAGAAGA 489331 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| | || ||||| ||| | || || ||| || || | || | Sbjct 489332 AGGCCGATTGGGCTCTCCGCTGGATTTCGGACAAGAACTCCGCGTTTGCGGAGCGCCTCG 489391 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || || ||||| ||||| |||||||| || || || || | ||||| |||| Sbjct 489392 TTGCTTTTGCAGCCGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCTATCTTCTGGC 489451 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || ||||||||||| || ||| ||||| | || || || || | Sbjct 489452 TCAAGAAGCGTGGTCTCATGCCCGGCCTCACGTTTTCGAACGAACTCATCTCCCGCGATG 489511 Query 125551 AGGGC 125555 ||||| Sbjct 489512 AGGGC 489516 Score = 138 bits (152), Expect = 2e-27 Identities = 302/445 (68%), Gaps = 8/445 (2%) Strand=Plus/Minus Query 125148 GCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCA 125206 |||||||| |||| || || || || |||||||| ||||| || || || ||||| | Sbjct 487487 GCCTTCTTCGCCGCTTCGGACGGCATTGTCAACGAGAATCTCGTCGAG-CGGTTCTCCAA 487429 Query 125207 AGAGTTGACCATTC--CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAAC 125264 ||| | ||| | | |||| ||||| ||||| ||||| ||||||||||| || Sbjct 487428 TGAGGT--CCAGGCGGCTGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATTGAAAAT 487371 Query 125265 GTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAA 125324 ||||| || || | |||||| || || |||| ||||| || || || Sbjct 487370 GTGCATTCAGAGACGTACTCCCTCCTCATCGACACATACATCAAGGACCCTGT-CGAGCG 487312 Query 125325 CACATGC-TCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGT 125383 ||| | | |||| |||| || || || | || | || || |||||| | |||| Sbjct 487311 CACTTTCCTCTTCGACGCTATAGAGACAATACCTTGCATCAAGAAGAAGGCTGACTGGGC 487252 Query 125384 GATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGC 125443 | | || ||||| | ||||| || ||| | | || || || || |||||||| || Sbjct 487251 GTTACGCTGGATAGCAGACGAGAATTCTGTCTTTTCGGAGAGGCTAGTTGCATTCGCAGC 487192 Query 125444 CGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGG 125503 ||| ||||| || ||||| || || || || | ||||| |||||||||||||| || Sbjct 487191 CGTCGAGGGAATTTTCTTCTCCGGCTCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGG 487132 Query 125504 ACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTG 125563 ||||||||||| || ||| ||||| | || || || || |||||| | || Sbjct 487131 TCTCATGCCCGGCCTCACGTTTTCGAACGAACTCATCTCCCGCGATGAGGGCATGCATAC 487072 Query 125564 TGACTTTGCCATTCTACTGTTTCGC 125588 ||||||||| ||||| || ||| Sbjct 487071 CGACTTTGCCTGCCTACTCTTCCGC 487047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741047380105760