Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq1048 84.2 2e-11 >seq1048 Length=1808 Score = 84.2 bits (92), Expect = 2e-11 Identities = 198/297 (67%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| ||||| || |||||| | ||| | ||| | || | | || || |||| | Sbjct 1276 CCGTGGGTGAGGTGACCGCCGTGGGCCAGGCTCATGCCCAGGATGGTGTCGCCGGGCTGC 1335 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || || |||| || || ||| || || || || || || || || ||||| ||| Sbjct 1336 AGCAGCGCCAGGTAGACAGCTGAGTTGGCCTGGGAGCCTGAGTGCGGCTGGACGTTGGCG 1395 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 | | | | ||||| | || || || || || ||||| | ||||| | ||| | Sbjct 1396 TAGTCGGCGCCGAACAGCTGCTTGGCGCGGTCGATGGCCAGTTGCTCGACCACGTCGACG 1455 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | | ||||||| ||||| || || ||| ||||| || || || ||||||||||| | Sbjct 1456 TATTCGCAGCCACCATAGTAGCGCTTGTGGGGATAGCCTTCGGCGTACTTGTTGGTCAGC 1515 Query 7178 ATAGAACCCTGTGCTTTCATAACATCGTCTGAC--ACATAGTTTTCGGACGCAATCA 7232 | ||||| |||| ||| || || | ||| |||||||| || || |||| Sbjct 1516 ACGCTGCCCTGGGCTTCCATGAC--CGCCGGACTGGTGTAGTTTTCCGAAGCGATCA 1570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555354341956960