Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq495 100 2e-16 seq1041 82.4 6e-11 >seq495 Length=337734 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| || | ||| ||| ||||||| |||||| Sbjct 131438 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGCTGC 131497 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| | | || | ||||||||||||| || | || |||||||||| ||||| Sbjct 131498 TTACCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATTTTG 131557 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | || || |||| |||||| ||| | || ||||| || ||||| Sbjct 131558 GCCTTGACGTTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCGGTC 131617 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| || |||||||| Sbjct 131618 AACGTCTTCACGAAGATCTGCAT 131640 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||||||||||| |||||||| || |||| || || || | ||||||| ||| Sbjct 130930 TGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAG-AAAGGGTGCGGCCATCCTCCAACTG 130988 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || |||| | |||||||||||| ||| | | ||||| ||| || || Sbjct 130989 CTTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGATCTT 131048 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||||| | | || || || | ||||| |||| || ||||| || ||||| Sbjct 131049 CGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCCCGGT 131108 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || || |||||||| ||||| Sbjct 131109 AAGGGTCTTGACAAAAATTTGCAT 131132 >seq1041 Length=164984 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || || || || || | || || | |||||||||||| Sbjct 54478 TGAAGAGTAGACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCAGCTGC 54537 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || |||| | |||||||| || ||| | || ||||||||| ||| ||| Sbjct 54538 TTGCCCGCGAAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGAATCTTC 54597 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || || | |||||| ||||| || || || || || ||| Sbjct 54598 GCCTTGACATTGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCCCAGTG 54657 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||||||||| Sbjct 54658 AGGGTCTTGACGAAAATCTGCAT 54680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421244649017276