Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1041 107 2e-18 seq606 96.9 3e-15 seq495 96.9 3e-15 >seq1041 Length=164984 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||||| || || ||||| || | ||| || || || ||| | ||||||||||| Sbjct 54705 GTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCCAGCTG 54764 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || | ||||| | | ||||||||| || ||||| || || ||||| | || || Sbjct 54765 CTTGCCCGCGAAGATGAGGCGTTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTT 54824 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||| || | ||| ||||||| | ||||| || | ||||||||| || ||||| Sbjct 54825 CGCCTTCACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGCGTGATGGTCTTGCCAGT 54884 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||||||||| Sbjct 54885 CAGAGTCTTGACGAAGATCTGCAT 54908 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| |||||||| || | ||| |||||| | |||| |||||| ||||| Sbjct 54985 GTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTG 55044 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || | ||||| | | ||||| || |||||||| || || ||||| | || || Sbjct 55045 CTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTT 55104 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 |||||||||| | | ||||| | ||||| |||| |||||||| || || || Sbjct 55105 TGCCTTGACGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGT 55164 Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| ||||||||||||| Sbjct 55165 GAGGGTCTTCACGAAGATCTGCATGC 55190 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 94798 CACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCT 94856 ||||||| || | |||||| ||||| || | ||||| ||| || ||| ||||| Sbjct 54470 CACCAAGGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCT 54529 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| || || | || || | | ||||| || || |||||||| || ||||| | Sbjct 54530 CCAGCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCT 54589 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || |||||||| | | | ||||| | ||||| || | |||||| || | Sbjct 54590 GAATCTTCGCCTTGACATTGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCT 54649 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || || || || || |||||||| Sbjct 54650 TCCCAGTGAGGGTCTTGACGAAAATCTGCAT 54680 >seq606 Length=277477 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || || ||||| || | ||| |||||| | || || || |||||| ||||| || | Sbjct 253213 GTCGACTCCTTCTGGATGTTGTAATCGG--AGAGCGTACGACCATCCTCGAGCTGCTTGC 253156 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | ||||||| | | ||||| || ||||| ||||| || ||||| | || || |||| Sbjct 253155 CCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCT 253096 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 ||||| ||| ||||| | ||||| || | ||||||||| || ||||| | | Sbjct 253095 TGACGTTATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAGG 253036 Query 94989 TTTTCACAAAGATCTGCAT 95007 | || |||||||||||||| Sbjct 253035 TCTTGACAAAGATCTGCAT 253017 >seq495 Length=337734 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || ||||| || | ||| ||||| | |||| | |||||| ||||| Sbjct 131157 GTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCTAGCTG 131216 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 |||||| ||||||| || | ||||| || || || || || || || || | ||| || Sbjct 131217 CTTTCCGGCAAAGATCAAACGCTGCTGGTCCGGGGGTATGCCCTCCTTATCCTGAATCTT 131276 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||| ||| | | | ||||| | || || || | |||||| || ||||| || Sbjct 131277 CGCCTTCACGTTGTCAATTGTGTCCGAAGATTCAACCTCCAACGTGATCGTCTTTCCGGT 131336 Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||||||||||| Sbjct 131337 GAGTGTCTTGACGAAGATCTGCATGC 131362 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || ||||||| | | |||||||| || ||||||||||| ||| Sbjct 131486 TCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTG 131545 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||||||||| ||| ||||| | ||||| |||| || ||| Sbjct 131546 TCCTGGATTTTGGCCTTGACGTTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATG 131605 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || ||||| ||||||||||| Sbjct 131606 GTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 131640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448284049755360