Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq749 120 5e-23 seq1276 107 3e-19 seq812 102 1e-17 seq180 95.1 2e-15 seq435 82.4 1e-11 >seq749 Length=228802 Score = 120 bits (132), Expect = 5e-23 Identities = 115/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| || | Sbjct 81272 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATTCAGGGTATCACCAAGCCCGCCA 81214 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||||||||| || ||||||||| | || || | |||| || |||| Sbjct 81213 TTCGCCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCCGGCCTCATCTACGAGGAGA 81154 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 |||| |||| | ||||||||||| Sbjct 81153 CCCGTGGTGTTCTCAAGATCTTCCT 81129 >seq1276 Length=438080 Score = 107 bits (118), Expect = 3e-19 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 |||||||||||||| ||||| |||||||| ||||||||| |||| || || |||| || Sbjct 394323 GCTATCCGTCGTCTTGCTCGCCGTGGTGGTGTCAAGCGTATCTCCGGCCTGATCTACGAG 394382 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 || | |||| ||| ||||||||||||| ||| ||| |||| ||| || || || Sbjct 394383 GAAACCCGTGGTGTCCTGAAGATCTTCCTTGAGAACGTCATCCGTGACTCTGTCACGTAC 394442 Query 16607 ACCGAGCACGCTAA 16620 || |||||||| || Sbjct 394443 ACTGAGCACGCGAA 394456 >seq812 Length=216596 Score = 102 bits (112), Expect = 1e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| |||||||| ||||| || || |||||||| || |||||| |||| Sbjct 135866 AGGTATCACGAAGCCTGCTATCCGCCGTCTCGCCCGCCGTGGTGGTGTGAAGCGTATCTC 135807 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 ||| | |||| || |||| |||| |||| | |||||||||||| ||| ||| Sbjct 135806 TGGTCTCATCTACGAGGAGACCCGTGGTGTTCTCAAGATCTTCCTCGAGAACGT 135753 >seq180 Length=122357 Score = 95.1 bits (104), Expect = 2e-15 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||||||||| || || |||||||| || ||||||||||| || |||||| |||| Sbjct 43508 AGGTATCACCAAGCCCGCCATTCGTCGTCTCGCGCGTCGTGGTGGTGTGAAGCGTATCTC 43567 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 || | |||| || |||| |||| |||| | ||||||||||| Sbjct 43568 CGGTCTCATCTACGAGGAGACCCGTGGTGTTCTCAAGATCTTCCT 43612 >seq435 Length=74228 Score = 82.4 bits (90), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 |||||||| ||||| || ||||||||||| ||||||||| |||| || | |||| || Sbjct 49617 GCTATCCGCCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCCGGCCTTATCTACGAG 49676 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 |||| ||| | ||| | ||||||||||| ||| ||| Sbjct 49677 GAGACTCGCGGTGTCCTCAAGATCTTCCTTGAGAACGT 49714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074033344268