Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq993 165 1e-35 >seq993 Length=568693 Score = 165 bits (182), Expect = 1e-35 Identities = 378/568 (67%), Gaps = 6/568 (1%) Strand=Plus/Minus Query 33293 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 33352 |||| | ||| || ||||| ||| |||| ||||| || | || |||||||| | Sbjct 489547 TAAAGAGCAAGCAAGCGAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCG 489488 Query 33353 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33412 |||||||||| |||||||| || |||||||| || ||||| || || || ||||| || | Sbjct 489487 AAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGC 489428 Query 33413 CAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG- 33471 | || |||||||| || || || || ||||| |||| || | ||| || | ||| | Sbjct 489427 CGGAGAAGAAGATACCCTCGACGGCTGCAAAAGCAACGAGGCGCTCCGCAAACGCGGAGT 489368 Query 33472 --CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529 |||| ||||| ||||||||||||||||||| || | || || || || | Sbjct 489367 TCTTGTCCGAAATCCAGCGGAGAGCCCAATCGGCCTTCTTCTTAATGCAGGGGATAGTGT 489308 Query 33530 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33589 | ||||| | || || | | | | || || | || || ||||| | | Sbjct 489307 CAATGGCGTCGAACAGGTGCTCGCGCTGCTGGGGGTCCTTGATGTAGGTGTCGATGAGGA 489248 Query 33590 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33649 || ||| | || || |||||||| || || ||||| || ||||||||||| | || Sbjct 489247 GAGAGTACGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAGAAACAGCGAG 489188 Query 33650 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGT 33709 |||| | ||| ||||| | | || ||||| | | ||| || || || || |||| Sbjct 489187 CCTCCGCCGCCTGAACTTCGTTGGAGAACCGTTCTACGAGATTCTCGTTGACAATACCGT 489128 Query 33710 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA--- 33766 | |||||||| || || | || || || |||| ||||| | | Sbjct 489127 CGGATGCTGCAAAGAAGGCAAGGACGTGGGAAATGAAATGACGCTCGTCGTCATTGAGGC 489068 Query 33767 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 33826 | || ||||| |||| || ||| || || | || | || || | ||||| || || | Sbjct 489067 GGTTGTTCCAGTCATGGAGATCCTTGGAAAGGTCCATCTCCTCTGCCGTCCAGAAGGACG 489008 Query 33827 CCTCTGCCTTTTTATACATGTTCCAGAT 33854 ||||||| || || ||||| | |||||| Sbjct 489007 CCTCTGCTTTCTTGTACATTTGCCAGAT 488980 Score = 129 bits (142), Expect = 7e-25 Identities = 342/521 (66%), Gaps = 6/521 (1%) Strand=Plus/Plus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 || |||||||| ||||||||||| |||||||| || |||||||| || ||||| || || Sbjct 487096 ATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATA 487155 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33459 || ||||| || || || ||||| ||||| || || || || || |||| || ||||| Sbjct 487156 GAGGCGAAGGAGCCGGAGAAGAAAATTCCCTCGACGGCTGCGAATGCAACTAGCCTCTCC 487215 Query 33460 CCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33516 | | | | | ||| |||||| | ||||| || |||||||| || | Sbjct 487216 GAAAAGACAGAATTCTCGTCTGCTATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATG 487275 Query 33517 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 33576 ||||| || || ||||| || | ||||| | | || | || || | || Sbjct 487276 CAAGGTATTGTCTCTATAGCGTCGAAGAGGAAAGTGCGCTCGACAGGGTCCTTGATGTAT 487335 Query 33577 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 33636 || ||||| | || ||| | || ||||| | |||||||| ||||| || ||| Sbjct 487336 GTGTCGATGAGGAGGGAGTACGTCTCTGAATGCACATTTTCAATCATGATCTGGAAGCCG 487395 Query 33637 TAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCA 33696 ||||| || | ||||| | ||| || || | | || || || | | ||| || Sbjct 487396 TAGAAGCAGCGGGCCTCAGCCGCCTGGACCTCATTGGAGAACCGCTCGACGAGATTCTCG 487455 Query 33697 TTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG 33756 || || || ||||| || || || || || | |||| | | |||| | ||| Sbjct 487456 TTGACAATGCCGTCCGAAGCGGCGAAGAAGGCAAGCACATATGAGAGGAAATGTCGCTCG 487515 Query 33757 TCTGGTGTTAGTTT---ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 33813 | || || || || ||||||||| | ||| | || | || | |||||| ||| Sbjct 487516 TTGGGCGTGAGCTTGCCATTCCAATCCCAAAGATCATGCGAGAGGTCAATTTCTTCTACT 487575 Query 33814 GTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 ||||| ||||| || | ||| | || ||||| | |||||| Sbjct 487576 GTCCAGAATGACGCTTGTGCTTGCTTGTACATCTGCCAGAT 487616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622937263992160