Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq495 114 1e-20 seq606 113 4e-20 seq1041 105 6e-18 seq855 100 3e-16 seq428 98.7 9e-16 seq823 91.5 1e-13 seq576 89.7 5e-13 seq406 84.2 2e-11 >seq495 Length=337734 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||| || || | || | ||| |||||||| ||||| ||||| ||| Sbjct 131642 CCGCCGCGCAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAA 131701 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| ||| |||||| ||||||||||| || ||| Sbjct 131702 AGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGGTCGGGCGGG 131761 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 131762 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCCACT 131821 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | || || || || || || || || || ||||||||| Sbjct 131822 TCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATG 131869 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | || |||||||| || ||||||||||| Sbjct 131133 GCCACCACGGAGACGAAGAACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGA 131192 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||||||||||| || || |||| ||||||||||||||||| || Sbjct 131193 AAGAGTGCGGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCCGGGGG 131252 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || || ||| ||| | | || | || || | || || | Sbjct 131253 TATGCCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATTGTGTCCGAAGATTCAAC 131312 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || ||||| || || || ||||| ||||||||| Sbjct 131313 CTCCAACGTGATCGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCATG 131361 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | || | ||| |||||||| ||||||||||| || Sbjct 131869 GCCGCCACGAAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGA 131928 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 131929 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 131988 Query 131127 GAT 131129 ||| Sbjct 131989 GAT 131991 >seq606 Length=277477 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||| || |||||||||||| | || || ||||| ||||||||||| Sbjct 253213 GTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGCTGCTTGCCC 253154 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | |||||||||||||||||||| || || ||||| ||| ||| |||| Sbjct 253153 GCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTTG 253094 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| ||||||| |||| || | ||| || || || | || Sbjct 253093 ACGTTATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAGGTC 253034 Query 131218 TTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 253033 TTGACAAAGATCTGCAT 253017 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 ||||| || || ||||| || | |||||| |||||| ||||||||||| ||| || Sbjct 253771 TCCTTCTGGATATTGTAGTCAGAGAGCGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAG 253712 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | |||||| ||||| |||||||| || || ||||| || || ||| | | Sbjct 253711 ATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTA 253652 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | || || | |||||||| || | || | || || || || || || || ||| Sbjct 253651 TCGATCGTGTCCGAGGACTCGACTTCCAACGTGATCGTCTTGCCCGTGAGTGTCTTGACG 253592 Query 131224 AAAATCTGCATG 131235 || ||||||||| Sbjct 253591 AATATCTGCATG 253580 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| || | |||||| |||||| ||||||||||| Sbjct 252923 GTGGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTGCGCCCGTCCTCGAGCTGCTTGCCA 252864 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 ||| |||| | |||||||||||||||||||| Sbjct 252863 GCGAAGATAAGGCGCTGCTGGTCCGGAGGGAT 252832 >seq1041 Length=164984 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||| || |||||||||||| | ||||| ||||| |||||||| || Sbjct 54992 GTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTGCTTCCCC 55051 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | |||||||||||| ||||| || || || ||||| ||| || |||| Sbjct 55052 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTG 55111 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| ||||||| || | || | ||| || || || || || Sbjct 55112 ACGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 55171 Query 131218 TTTACGAAAATCTGCATG 131235 || ||||| ||||||||| Sbjct 55172 TTCACGAAGATCTGCATG 55189 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| || || ||||| |||||| ||||||||||| Sbjct 54712 GTTGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCC 54771 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | || ||||| || || || || || || ||||| ||| ||| ||| Sbjct 54772 GCGAAGATGAGGCGTTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 54831 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | |||||||| |||| || | ||| || || || ||||| Sbjct 54832 ACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGAGTC 54891 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 54892 TTGACGAAGATCTGCAT 54908 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | || |||||||| ||||||||||| || Sbjct 55189 GCCACCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGA 55248 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| ||||||||||| ||| |||| || ||||||||||| ||||| Sbjct 55249 AAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 55308 Query 131127 GAT 131129 ||| Sbjct 55309 GAT 55311 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || || || || ||| || || || ||||| ||||||||||| Sbjct 54484 GTAGACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCAGCTGCTTGCCC 54543 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | ||||||||||| || || || || || ||||| || ||| |||| Sbjct 54544 GCGAAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGAATCTTCGCCTTG 54603 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | ||||||| |||| || | || || || || || || Sbjct 54604 ACATTGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCCCAGTGAGGGTC 54663 Query 131218 TTTACGAAAATCTGCAT 131234 || |||||||||||||| Sbjct 54664 TTGACGAAAATCTGCAT 54680 >seq855 Length=205711 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | ||| |||||||| || |||||||| ||||||| |||||| Sbjct 132356 CGGAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 132415 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 ||||| ||||||||||| ||| |||| | |||||||||||||| ||||| Sbjct 132416 TCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGAT 132465 >seq428 Length=363050 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||| |||||||| || |||||||| ||||| Sbjct 255504 CCACCACGCAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 255445 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 255444 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 255385 Query 131128 AT 131129 || Sbjct 255384 AT 255383 >seq823 Length=214425 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/126 (76%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGC---AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC 131063 ||||||||| | |||| ||||| | || | ||||||||||| |||||||||||||| Sbjct 1259 GCCACCGCGAAGACGCCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAATC 1318 Query 131064 GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 | || | ||| |||||| |||||||| | |||| |||| | || ||||||| || Sbjct 1319 GGAGATCGCGCGACCGTCCTCGAGCTGCTTACTTGCGAAGATCAGGCGTCGCTGGTCGGG 1378 Query 131124 AGGGAT 131129 |||||| Sbjct 1379 AGGGAT 1384 >seq576 Length=23070 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||| || |||||||||||| | || || |||||| |||||||| || Sbjct 15031 GTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCGTCCTCGAGCTGCTTTCCC 14972 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || | || | | | ||||||| |||||||| || || ||| | ||| ||| ||| Sbjct 14971 GCAAATATCAGGCACCGCTGGTCAGGAGGGATACCCTCCTTGGCCTGGATCTTCGCTTTG 14912 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| ||||||| |||| | ||||| || ||||| | || Sbjct 14911 ATATCATCGATCGTGTCGGACGACTCGACCTCGAGCATGACGGTCTTGCCGGTCAAGGTC 14852 Query 131218 TTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 14851 TTAACAAAGATCTGCAT 14835 >seq406 Length=388386 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/124 (76%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 131007 GCCACCGCGCAA---ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC 131063 ||||||||| | ||| ||||| | ||| | ||||||||||| |||||||||||||| Sbjct 234867 GCCACCGCGGACTCGACGGAGCACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATC 234808 Query 131064 GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 | | ||||| |||||| |||||||| | ||| |||| | ||||||||| |||| Sbjct 234807 GGAGACCGTGCGACCGTCCTCGAGCTGCTTACTGGCGAAGATCAGGCGCTGCTGG-CCGG 234749 Query 131124 AGGG 131127 | || Sbjct 234748 AAGG 234745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472005271395840