Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq876 140 2e-28 seq410 116 2e-21 seq907 104 2e-17 seq606 89.7 3e-13 seq495 86.0 4e-12 >seq876 Length=3194 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2936 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2995 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2996 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3030 >seq410 Length=88423 Score = 116 bits (128), Expect = 2e-21 Identities = 211/308 (69%), Gaps = 3/308 (1%) Strand=Plus/Plus Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 ||| ||||||| ||||| || ||||| || |||||| | |||||| | || || || Sbjct 21407 AAGATCGAGGGCAAGGGCAATGGTATCAAGACCGTCCTCCCGAACATGTCCGACGTGGCG 21466 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 |||||| | ||||| |||| ||||| || || | ||||| || || |||||||| Sbjct 21467 CGTGCGCTCAGCCGCCCGCCCACGTACCCCACCAAGTTCTTCGGCTGTGAGCTTGGCGCG 21526 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 |||||| || || | ||||| |||| |||||| ||||| |||| || | || Sbjct 21527 CAGACGTCCTTCGACGAGCGGAACGACCGCTACATCGTCAACGGCGCGCACGACGCGACC 21586 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473 ||||| | || | || ||||| || || |||||| || || || | ||| | Sbjct 21587 AAGCTCCGTGAGCTTCTCGACGGTTTCATCGACAAGTTCGTCCTATGCAAGTCGTGCAAG 21646 Query 6474 AACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAA 6533 ||||||||||| || || || | ||||||| || |||| | | |||||| Sbjct 21647 AACCCGGAGACGGACCTCATCAT---CACCAAGACCGACGACATCATCCGCGACTGCAAG 21703 Query 6534 GCGTGCGG 6541 |||||||| Sbjct 21704 GCGTGCGG 21711 >seq907 Length=2831 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1812 CTCTCTTTCCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1871 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 1872 GCCAATATTTAGCTTTA 1888 >seq606 Length=277477 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||||||||||| ||||| ||||| || || | ||| |||| || | ||| Sbjct 253500 TGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGTTGC 253441 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || || | ||| || ||||||| || | ||| || || ||| || || Sbjct 253440 TTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGATCTTC 253381 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| || || | || || || | || ||||| | || ||||| || |||||| Sbjct 253380 GCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGCCCGTC 253321 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 || || || ||||| ||||||||| Sbjct 253320 AACGTCTTAACGAAGATCTGCATG 253297 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||||| ||||| || |||||||| ||||| | || |||| || | || Sbjct 253783 TGGAGGGTGCTTTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGCCCGTCCTCGAGCTGC 253724 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || || || ||||| |||| |||| ||| || |||||| ||| || Sbjct 253723 TTGCCCGCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTG 253664 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||| || | || || || || ||||| || || || || || ||||| Sbjct 253663 GCCTTCACGTTATCGATCGTGTCCGAGGACTCGACTTCCAACGTGATCGTCTTGCCCGTG 253604 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | || || ||||||||||||||| Sbjct 253603 AGTGTCTTGACGAATATCTGCATG 253580 >seq495 Length=337734 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | || ||| | || | ||||| || |||||| ||||||||||| || | Sbjct 131640 TACCGCCGCGCAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGG 131699 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| |||| || | || || ||||| || |||||||| || || |||| | Sbjct 131700 AAAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGGTCGGGCG 131759 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCA 38267 ||| ||| || |||||| || || ||| ||||| | | || || | || || Sbjct 131760 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATCGTGTC-CGACGACTCC 131818 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| | || || || || ||||| | ||| || || || ||||||||| Sbjct 131819 ACTTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATG 131869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334941991152356