Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq993 138 1e-27 >seq993 Length=568693 Score = 138 bits (152), Expect = 1e-27 Identities = 341/516 (66%), Gaps = 6/516 (1%) Strand=Plus/Plus Query 32702 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 32761 |||||| ||||||||||| |||||||| || |||||||| || ||||| || || || || Sbjct 487101 TTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGC 487160 Query 32762 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 32821 || || || || ||||||||||| || || || || || |||| || ||||| | | Sbjct 487161 GAAGGAGCCGGAGAAGAAAATTCCCTCGACGGCTGCGAATGCAACTAGCCTCTCCGAAAA 487220 Query 32822 ACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878 | | | ||| |||||| | ||||| || |||||||| || | ||||| Sbjct 487221 GACAGAATTCTCGTCTGCTATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATGCAAGG 487280 Query 32879 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 32938 |||||||||||||| | ||||| | | || | || || | ||||| || Sbjct 487281 TATTGTCTCTATAGCGTCGAAGAGGAAAGTGCGCTCGACAGGGTCCTTGATGTATGTGTC 487340 Query 32939 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 32998 || | || ||| | || ||||| | |||||||| || || || |||||||| Sbjct 487341 GATGAGGAGGGAGTACGTCTCTGAATGCACATTTTCAATCATGATCTGGAAGCCGTAGAA 487400 Query 32999 GCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 33058 ||| | ||||| | ||| || || | | || || || | | ||| || || || Sbjct 487401 GCAGCGGGCCTCAGCCGCCTGGACCTCATTGGAGAACCGCTCGACGAGATTCTCGTTGAC 487460 Query 33059 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 33118 || ||||| || || || || || | |||| | | |||| | |||| || Sbjct 487461 AATGCCGTCCGAAGCGGCGAAGAAGGCAAGCACATATGAGAGGAAATGTCGCTCGTTGGG 487520 Query 33119 TGTTAGTTT---ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 33175 || || || ||||||||| | ||| | || | || | |||||| |||||||| Sbjct 487521 CGTGAGCTTGCCATTCCAATCCCAAAGATCATGCGAGAGGTCAATTTCTTCTACTGTCCA 487580 Query 33176 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 ||||| || | ||| | || ||||| | |||||| Sbjct 487581 GAATGACGCTTGTGCTTGCTTGTACATCTGCCAGAT 487616 Score = 138 bits (152), Expect = 1e-27 Identities = 372/568 (65%), Gaps = 6/568 (1%) Strand=Plus/Minus Query 32650 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 32709 |||| | ||| || ||||| ||| || | ||||| || | || | |||||| | Sbjct 489547 TAAAGAGCAAGCAAGCGAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCG 489488 Query 32710 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 32769 |||||||||| |||||||| || |||||||| || ||||| || || || || || || | Sbjct 489487 AAAACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGC 489428 Query 32770 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG- 32828 | || ||||| || || || || || ||||| |||| || | ||| || | ||| | Sbjct 489427 CGGAGAAGAAGATACCCTCGACGGCTGCAAAAGCAACGAGGCGCTCCGCAAACGCGGAGT 489368 Query 32829 --CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 |||| ||||| ||||||||||||||||||| || | || || || || | Sbjct 489367 TCTTGTCCGAAATCCAGCGGAGAGCCCAATCGGCCTTCTTCTTAATGCAGGGGATAGTGT 489308 Query 32887 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 32946 | || || | || || | | | | || || | || || || || | | Sbjct 489307 CAATGGCGTCGAACAGGTGCTCGCGCTGCTGGGGGTCCTTGATGTAGGTGTCGATGAGGA 489248 Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006 || ||| | || || |||||||| || || || || || |||||||| || | || Sbjct 489247 GAGAGTACGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAGAAACAGCGAG 489188 Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066 |||| | ||| ||||| | | || |||||| | | ||| || || || || |||| Sbjct 489187 CCTCCGCCGCCTGAACTTCGTTGGAGAACCGTTCTACGAGATTCTCGTTGACAATACCGT 489128 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA--- 33123 | |||||||| || || | || || || |||| ||||| | | Sbjct 489127 CGGATGCTGCAAAGAAGGCAAGGACGTGGGAAATGAAATGACGCTCGTCGTCATTGAGGC 489068 Query 33124 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 33183 | || ||||| |||| || ||| || || | |||| || || | ||||| || || | Sbjct 489067 GGTTGTTCCAGTCATGGAGATCCTTGGAAAGGTCCATCTCCTCTGCCGTCCAGAAGGACG 489008 Query 33184 CCTCTGCCTTTTTATACATATTCCAGAT 33211 ||||||| || || ||||| | |||||| Sbjct 489007 CCTCTGCTTTCTTGTACATTTGCCAGAT 488980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633621893569600