Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq993 203 4e-47 >seq993 Length=568693 Score = 203 bits (224), Expect = 4e-47 Identities = 385/563 (68%), Gaps = 9/563 (2%) Strand=Plus/Minus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 ||||| || ||||||||||| | || || || || || || | || || || || Sbjct 489539 AAGCAAGCGAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTG 489480 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 | || || | || || || ||||||||||| || || || || || || || || Sbjct 489479 AGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAG 489420 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268 || ||||| || ||||||||||| || || | || || ||||| ||||| || || Sbjct 489419 AAGATACCCTCGACGGCTGCAAAAGCAACGAGGCGCTCCGCAAAC---GCGGAGTTCTTG 489363 Query 93269 -CTGA--TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 | || |||| | |||||||||||| || |||||||| || || | || || || Sbjct 489362 TCCGAAATCCAGCGGAGAGCCCAATCGGCCTTCTTCTTAATGCAGGGGATAGTGTCAATG 489303 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 |||| || |||| || |||| | | || ||||| || ||||| | ||||| Sbjct 489302 GCGTCGAACAGGTGCTCGCGCTGCTGGGGGTCCTTGATGTAGGTGTCGATGAGGAGAGAG 489243 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 ||| | || || || | |||||||| ||| ||||| ||||||||||| | ||| ||| Sbjct 489242 TACGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAAACCGTAGAAACAGCGAGCCTCC 489183 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 | ||| ||||| | || || | ||||||||||| || ||||| ||||| |||||| Sbjct 489182 GCCGCCTGAACTTCGTTGGAGAACCGTTCTACGAGATTCTCGTTGACAATACCGTCGGAT 489123 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTA 93562 |||||||| || || | | || || ||||| ||| || || || | | || Sbjct 489122 GCTGCAAAGAAGGCAAGGACGTGGGAAATGAAATGACGCTCGTCGTCATTGAGGCGGTTG 489063 Query 93563 TCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCT 93622 | ||| || ||||| || ||||| || | || || | ||||| || || || ||| Sbjct 489062 TTCCAGTCATGGAGATCCTTGGAAAGGTCCATCTCCTCTGCCGTCCAGAAGGACGCCTCT 489003 Query 93623 GCTTTTTTGTACATATCCCATAT 93645 ||||| |||||||| | ||| || Sbjct 489002 GCTTTCTTGTACATTTGCCAGAT 488980 Score = 167 bits (184), Expect = 3e-36 Identities = 380/567 (67%), Gaps = 15/567 (3%) Strand=Plus/Plus Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 || ||| |||||||||||||| | || || || || || || | || || || || Sbjct 487056 TAGGCAGGCAAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGT 487115 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | || || | || || || ||||||||||| || || || || || || || || Sbjct 487116 GAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAA 487175 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATT--- 93264 || || || || |||||||| ||||| || | | || | ||| | ||||| Sbjct 487176 GAAAATTCCCTCGACGGCTGCGAATGCAACTAGCCTCTCCGAAAA---GACAGAATTCTC 487232 Query 93265 -ACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGA 93323 ||||| ||||| ||| ||||| || || || ||||| || ||||||| ||| || | Sbjct 487233 GTCTGCT-ATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATGCAAGGTATTGTCTCTA 487291 Query 93324 TAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAG 93383 |||||| || ||| || |||||| | | || |||||||| ||||| | || | Sbjct 487292 TAGCGTCGAAGAGGAAAGTGCGCTCGACAGGGTCCTTGATGTATGTGTCGATGAGGAGGG 487351 Query 93384 AATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 | ||| | || ||||| ||||| || || || ||||| |||||||| || | || | Sbjct 487352 AGTACGTCTCTGAATGCACATTTTCAATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCT 487411 Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | | ||| || || | || || | ||| |||||||| || ||||| || || || | Sbjct 487412 CAGCCGCCTGGACCTCATTGGAGAACCGCTCGACGAGATTCTCGTTGACAATGCCGTCCG 487471 Query 93504 ATGCTGCaaaaaaaGCCA--ATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT 93561 | || || || || || | | ||||| | |||||| ||| | | ||||| Sbjct 487472 AAGCGGCGAAGAAGGCAAGCACATATG--AGAGGAAATGTCGCTCGTTGGGCGTGAGCTT 487529 Query 93562 ---ATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 || |||||| | ||||| | || || || | |||||| || ||||| || || || Sbjct 487530 GCCATTCCAATCCCAAAGATCATGCGAGAGGTCAATTTCTTCTACTGTCCAGAATGACGC 487589 Query 93619 TTCTGCTTTTTTGTACATATCCCATAT 93645 || ||||| |||||||| | ||| || Sbjct 487590 TTGTGCTTGCTTGTACATCTGCCAGAT 487616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556851918070240