Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1041 116 3e-21 seq495 114 1e-20 seq576 104 2e-17 seq606 96.9 3e-15 >seq1041 Length=164984 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||||||||| || || | || Sbjct 55188 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 55129 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||| || || ||||||||||| ||||| ||||| || Sbjct 55128 GACACCATTGATAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 55069 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || || || ||| | |||||| ||||| | |||||||||||| Sbjct 55068 CAGCGTCTTATCTTCGCGGGGAAGCAGCTTGAGGATGGTCGCACTCTTTCCGATTACAAC 55009 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || |||||||| Sbjct 55008 ATCCAGAAGGAATCCAC 54992 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || ||| |||| || || || || | | Sbjct 54680 ATGCAGATTTTCGTCAAGACCCTCACTGGGAAGACGATCACGCTCGAGGTCGAGTCTTCG 54621 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| ||||||||||||||||| ||||| || Sbjct 54620 GACACGATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATTCCGCCCGACCAG 54561 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || || ||||| ||| | |||||| || || | ||||| || || Sbjct 54560 CAGCGCCTTATTTTCGCGGGCAAGCAGCTGGAGGATGGTCGGACTCTGTCCGACTATAAT 54501 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 54500 ATCCAGAAGGAGTCTAC 54484 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || |||| || || || || || | Sbjct 54908 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCCTCT 54849 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || ||||||||||| ||||| || ||||| Sbjct 54848 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 54789 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || || ||||| ||| | ||||| |||||| | || || |||||| Sbjct 54788 CAACGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCTGACTACAAC 54729 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 54728 ATCCAGAAGGAGTCAAC 54712 >seq495 Length=337734 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | ||||| || || | || || ||||| || | | Sbjct 131132 ATGCAAATTTTTGTCAAGACCCTTACCGGGAAGACCATTACGCTCGAAGTCGAGTCGTCG 131073 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || || |||||||| || || |||||||| Sbjct 131072 GACACGATTGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGGGATCCCGCCCGATCAG 131013 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||||| |||||| ||||||| | || || || ||| Sbjct 131012 CAGCGTCTCATTTTCGCCGGCAAGCAGTTGGAGGATGGCCGCACCCTTTCTGACTATAAC 130953 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 130952 ATTCAGAAGGA 130942 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| |||| || |||||||| | | Sbjct 131868 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAAGTGGAGTCGTCG 131809 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || ||||||||||| || || ||||| || Sbjct 131808 GACACGATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 131749 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| || || | ||||| ||||| Sbjct 131748 CAGCGCCTAATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACTCTTTCCGACTACAAT 131689 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | || | || | || ||||||| ||| Sbjct 131688 ATTCAGAAGGAGTCTACCCTTCACCTTGTCCTTCGTCTGCGCGGCGGT 131641 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| |||| | || || ||| | | Sbjct 131360 ATGCAGATCTTCGTCAAGACACTCACCGGAAAGACGATCACGTTGGAGGTTGAATCTTCG 131301 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| || |||||||| || || || || || Sbjct 131300 GACACAATTGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATACCCCCGGACCAG 131241 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || |||||||| || ||| |||||||| |||||| | || ||||||||| Sbjct 131240 CAGCGTTTGATCTTTGCCGGAAAGCAGCTAGAGGATGGCCGCACTCTTTCGGATTACAAC 131181 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 131180 ATCCAGAAGGAGTCCAC 131164 >seq576 Length=23070 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| || || ||||| || || |||| || || || || | || Sbjct 14835 ATGCAGATCTTTGTTAAGACCTTGACCGGCAAGACCGTCATGCTCGAGGTCGAGTCGTCC 14894 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || ||||||||| || || || | |||||||||||| || || || || Sbjct 14895 GACACGATCGATGATATCAAAGCGAAGATCCAGGCCAAGGAGGGTATCCCTCCTGACCAG 14954 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 | | || |||||||| || || ||| | ||||| || || |||||||||||||| Sbjct 14955 CGGTGCCTGATATTTGCGGGAAAGCAGCTCGAGGACGGTCGTACGCTCTCCGATTACAAC 15014 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 15015 ATCCAGAAGGAGTCGAC 15031 >seq606 Length=277477 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || || || || || || |||||||||||||||| | | Sbjct 253298 ATGCAGATCTTCGTTAAGACGTTGACGGGCAAGACTATCACTCTTGAAGTGGAGTCTTCG 253357 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || || |||||||| ||||| |||||||| Sbjct 253358 GACACGATCGACAACGTCAAGGCGAAGATCCAGGATAAGGAGGGCATTCCGCCCGATCAG 253417 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| || | || || || ||| | ||||| |||||| Sbjct 253418 CAGCGCTTGATTTTCGCCGGCAAGCAACTCGAAGACGGTCGTACCCTTTCCGACTACAAC 253477 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 253478 ATTCAGAAGGA 253488 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || |||| || || || || | || Sbjct 253017 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACGCTCGAGGTCGAGTCGTCC 253076 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || |||||||||||||| || || || || Sbjct 253077 GACACGATCGATAACGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 253136 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | |||||| || || |||||||||||||| Sbjct 253137 CAGCGCCTGATCTTTGCGGGCAAGCAGCTCGAGGATGGTCGTACGCTCTCCGATTACAAC 253196 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 253197 ATCCAGAAGGAGTCGAC 253213 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| | ||||| || || | Sbjct 253581 ATGCAGATATTCGTCAAGACACTCACGGGCAAGACGATCACGTTGGAAGTCGAGTCCTCG 253640 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || ||||| ||||||||||| || || ||||| ||| Sbjct 253641 GACACGATCGATAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAA 253700 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||| | ||||| ||||| |||| || ||||| Sbjct 253701 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACGCTCTCTGACTACAAT 253760 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || ||| |||| Sbjct 253761 ATCCAGAAGGAAAGCACC 253778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419721472704940