Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq277 129 1e-24 seq993 86.0 1e-11 >seq277 Length=412105 Score = 129 bits (142), Expect = 1e-24 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || || || |||||||||||||||||||| || ||| |||||||||| || | ||| Sbjct 287521 GGCTCGCTCTCCGGTGGTTGGAAGATGAAGCTCGCGCTCGCTCGCGCCATGCTCTTCCGT 287462 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 || || | || || ||||||||||| ||||||||| ||||| |||||| || ||| Sbjct 287461 GCGGACATTCTCCTACTTGATGAGCCCACCAACCACTTGGACGTTGTCAACGTCGCGTGG 287402 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||||| ||| | || |||| | || |||| ||||| |||||||| Sbjct 287401 CTCGAGAACTACCTCACCGGCCTCAAGACCTGCACGTCGATCATCGTCTCGCACGACTCC 287342 Query 279879 GGCTTC 279884 |||||| Sbjct 287341 GGCTTC 287336 Score = 100 bits (110), Expect = 6e-16 Identities = 146/204 (72%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| | || |||||||| || |||| |||| | |||||| | || | Sbjct 287038 GGTCCCAACGGTTCCGGCAAGTCTACGCTCGTCAAGCTCCTCATTGGCGATTCGGAGCCG 286979 Query 280239 ACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | |||| || | | |||||||| |||||| || || | ||||||||| |||||| Sbjct 286978 AACAAGGGCGGTGAGATCTGGAAGCACCCCAACTTGGTCATCGGTTACGTCGCGCAGCAC 286919 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGC 280355 || |||||||||||||| | ||||| |||| ||| || | | ||||| | |||||| Sbjct 286918 GCGTTCCACCACATCGACCAGCACCTCGACAAGACCCCGCTCGAGTACATGCTGTGGCGT 286859 Query 280356 TATGCAAGTGGGCAGGATCTGGAG 280379 || | ||| ||||||| ||| Sbjct 286858 TACCAGACTGGTGAGGATCTCGAG 286835 >seq993 Length=568693 Score = 86.0 bits (94), Expect = 1e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||| | || ||||| | |||||||||||||| ||||| ||| Sbjct 489857 TCAAAGAAGTTGGTCTTGCCTTGGAGTGAGATCATGTCCATGAAGTCGAACGGGTTGGTG 489798 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||||||| || ||||| || |||| | ||| || || || ||||| | Sbjct 489797 ACGCCGTACTGCTTCTCATCTCCAAGGGCGACGAGCAGGCGATCGGCAACGAACTCGATG 489738 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || || | ||| || | | |||||||||||| Sbjct 489737 TATTGGCACATGAGCTTGGCGTTCATGCCAAT 489706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027819996153116