Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1041 118 9e-22 seq606 93.3 4e-14 seq495 84.2 2e-11 >seq1041 Length=164984 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||||||| | ||| ||| ||| ||||| || || || Sbjct 54992 GTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTGCTTCCCC 55051 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| ||||||||||| || ||||| |||||| || Sbjct 55052 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTG 55111 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| || ||||| || | || | || ||||| || || || Sbjct 55112 ACGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 55171 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 55172 TTCACGAAGATCTGCATG 55189 >seq606 Length=277477 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || || || || || || ||| ||||||||||||||||||| ||||| ||||| || ||| Sbjct 253735 TCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTG 253676 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || |||||| || | | || | ||||| | ||| ||||| |||| || | | Sbjct 253675 TCCTGAATCTTGGCCTTCACGTTATCGATCGTGTCCGAGGACTCGACTTCCAACGTGATC 253616 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || ||||| || || || || || || ||||||||| Sbjct 253615 GTCTTGCCCGTGAGTGTCTTGACGAATATCTGCATG 253580 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || || |||||||||||| | |||||| ||| || || || || || Sbjct 253214 CGTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGCTGCTTGCC 253155 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 || |||| || ||||| ||||||||||| || || || ||||| ||||| || Sbjct 253154 CGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTT 253095 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||||||| || ||||| || | || | || ||||| |||| || Sbjct 253094 GACGTTATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAGGT 253035 Query 114365 TTTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 253034 CTTGACAAAGATCTGCAT 253017 >seq495 Length=337734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | || | || || || || || ||||||||||| Sbjct 131131 ATGCCACCACGGAGACGAAGAACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCC 131190 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| || || || || || || |||| | |||||| |||||||| Sbjct 131191 GAAAGAGTGCGGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCCGGG 131250 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || || || |||||| || | | |||| ||||| | ||||| Sbjct 131251 GGTATGCCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATTGTGTCCGAAGATTCA 131310 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | ||| || ||||| || || || || || ||||||||| Sbjct 131311 ACCTCCAACGTGATCGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCATG 131361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420127866384912