Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq993 304 2e-77 seq506 134 3e-26 >seq993 Length=568693 Score = 304 bits (336), Expect = 2e-77 Identities = 402/551 (73%), Gaps = 19/551 (3%) Strand=Plus/Minus Query 42407 TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCT 42466 ||||||| | | | || |||||||||||||| || |||||||| ||||| ||||| || Sbjct 487506 TTTCCTCTCATATGTGCTTGCCTTCTTCGCCGCTTCGGACGGCATTGTCAACGAGAATCT 487447 Query 42467 GGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCA 42526 | | ||||| || ||||| ||| |||||| |||||||||||||||||||| Sbjct 487446 CGTCGAGCGGTTCTCCAATGAGGTCCAGGCGGCTGAGGCCCGCTGCTTCTACGGCTTCCA 487387 Query 42527 GATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCT 42586 ||| || || || ||||| || ||| |||| || || || |||| |||||| Sbjct 487386 GATCATGATTGAAAATGTGCATTCAGAGACGTACTCCCTCCTCATCGACACATACATCAA 487327 Query 42587 GGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAA 42646 ||| || |||||||| | || ||| | || || ||||| || || ||||||||||| Sbjct 487326 GGACCCTGTCGAGCGCACTTTCCTCTTCGACGCTATAGAGACAATACCTTGCATCAAGAA 487267 Query 42647 GAAGGCGGACTGGGCGCTCAACTGGAT------CGAGAGTCCCGACGCAACGTTCGGCGA 42700 |||||| ||||||||| | |||||| ||||| | | | | |||| || Sbjct 487266 GAAGGCTGACTGGGCGTTACGCTGGATAGCAGACGAGAATTCTGTC----TTTTCG--GA 487213 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 |||||| || || || | ||||||||||| || |||||||| ||| |||||||||| || Sbjct 487212 GAGGCTAGTTGCATTCGCAGCCGTCGAGGGAATTTTCTTCTCCGGCTCCTTCGCCTCTAT 487153 Query 42761 CTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 ||||||||||||| || ||| || |||||||| ||||| || ||||||||||||||| Sbjct 487152 CTTCTGGCTCAAGAAGCGTGGTCTC-ATGCCCGGCCTCACGTTTTCGAACGAACTCATCT 487094 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 | | || ||||| |||||| |||||||||||||| || ||| |||| || | | Sbjct 487093 CCCGCGATGAGGGCATGCATACCGACTTTGCCTGCCTACTCTTC---CGCCATCTTCGTC 487037 Query 42880 ACAAGCCCTC-GAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAG 42938 | | |||| | |||| || | || ||||| ||||| |||||||| || ||| Sbjct 487036 -GACGACCTCATCCGAAGCGAGTGGAGAAGATTATCACAGAGGCTGTGGAGATTGAAAAG 486978 Query 42939 GAGTTCCTCAC 42949 ||||||||||| Sbjct 486977 GAGTTCCTCAC 486967 Score = 235 bits (260), Expect = 1e-56 Identities = 374/529 (71%), Gaps = 17/529 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||| || || || ||||| || ||||| ||||| || | ||||| Sbjct 489106 CTTGCCTTCTTTGCAGCATCCGACGGTATTGTCAACGAGAATCTCGTAGAACGGTTCTCC 489165 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || || ||| ||||| ||||| |||||||| |||||||| || |||||| Sbjct 489166 AACGAAGTTCAGGCGGCGGAGGCTCGCTGTTTCTACGGTTTCCAGATTATGATGGAGAAC 489225 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| |||| | || || |||| |||||| ||| ||| |||| Sbjct 489226 ATTCACTCCGAGACGTACTCTCTCCTCATCGACACCTACATCAAGGACCCCCAGCAGCGC 489285 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | |||||| | ||||| || || || |||||||| ||||||||||| || ||||| Sbjct 489286 GAGCACCTGTTCGACGCCATTGACACTATCCCCTGCATTAAGAAGAAGGCCGATTGGGCT 489345 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 ||| |||||| | | | || | | |||| | ||| | || || || ||| | || Sbjct 489346 CTCCGCTGGATTTCG-GACAAGAACTCCGCGTTTGCGGAGCGCCTCGTTGCTTTTGCAGC 489404 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGG 42780 ||||||||| ||||||||||| ||| |||||||||| ||||||||||||||| || || Sbjct 489405 CGTCGAGGGTATCTTCTTCTCCGGCTCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGG 489464 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | || |||||||| ||||| || ||||||||||||||| | | || ||||| |||||| Sbjct 489465 TCTC-ATGCCCGGCCTCACGTTTTCGAACGAACTCATCTCCCGCGATGAGGGCATGCATA 489523 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCT---CAGGC--ACAAGCCCTCGAAGGA 42895 ||||| || || | || ||| |||||||| |||| || |||||| | Sbjct 489524 CCGACTTCGCTTG---CTTGCTCTTTAGCCACCTGAAGAGGCGTCCACACCCTCGTA--- 489577 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 ||||| | ||||| ||||||||||| | || || |||| ||| Sbjct 489578 --TCGTCCGCGAGATCATTACGGAGGCCGTCGCCATTGAACAGGAATTC 489624 >seq506 Length=319592 Score = 134 bits (148), Expect = 3e-26 Identities = 327/493 (66%), Gaps = 22/493 (4%) Strand=Plus/Minus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACG--GGGCTGCCCTCGTAGGTCGGGT 244355 |||||||| || |||| ||| |||| || |||| |||||||||| ||| ||| || Sbjct 219719 CCCCACATATCGTACTGGAGCTTGCCCT-GC-GACGCCGGGCTGCCCTGGTACGTCTCGT 219662 Query 244356 AGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCT 244415 | || || | || ||||| || |||||| | |||| || |||| ||||||||||| Sbjct 219661 ACGGGCCCTGCTCCTTGGCCATCTCGCAGCTCGCCTCGACTGCAGCGTGGTAGATGGTCT 219602 Query 244416 CGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCA 244475 |||||||| | ||||| | || |||| | | || ||| || | | || | || Sbjct 219601 CGAAGATCTGCAGGTTCAGCTTACGTGCCTCGACCGAGTCGAATGGCAGCCGCAGCGCCA 219542 Query 244476 TGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGC 244535 |||| |||| || || |||||||| |||||||| || || | ||| ||| |||| ||| Sbjct 219541 TGAACGCGTCCGCGAGGCCCTGCACACCGATGCCAATCGGACGGTGGCGCATGTTCGAGT 219482 Query 244536 GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGA 244595 | ||| || || | ||||| |||| | ||||| | ||| |||||| | || Sbjct 219481 TCCGGGCCTCAGGAATCGGGTAGTAGTTCGCATCGATGATGCGGTTCAGGTTGAACGCGA 219422 Query 244596 TCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGG 244655 | |||||||| ||| ||| |||| |||| | | | ||| ||||| Sbjct 219421 CGACCTTTGCGACGTCGTGGAGCCTCTGGAAGTTGTAC---TTGCCACCCT---CGATG- 219369 Query 244656 TGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCG 244715 ||| || || | || |||||||||||||| ||| || | Sbjct 219368 -----------AACGACGGCAGCGCAATAGAAGCAAGGTTGCAGACGGCGGTCTCATCGG 219320 Query 244716 AGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCT 244775 || ||||| || ||||| ||||| |||||| | |||||||||| || |||| || Sbjct 219319 GTGCGGAGTACTCGATGATCTCCGTGCACAGGTTAGAGGACTTGATGGTACCAAGGTTCT 219260 Query 244776 GGTGATTGGACTT 244788 | || |||||||| Sbjct 219259 GCTGGTTGGACTT 219247 Score = 87.8 bits (96), Expect = 3e-12 Identities = 182/266 (68%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGT 243935 |||||||||||| |||| || ||| | |||| || || || || | | || || | Sbjct 220185 GTTGAGGGACTGTGACTGGCAGATGAACG-CGCCGCGGTCCGCCGCGAGGTCGAGGACCT 220127 Query 243936 CCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTT 243995 |||||| || ||||| | | ||||||||||| | ||| | || || |||| | Sbjct 220126 TCTTCTGCGAGATCTCCCAGACGGTCTTGTAGATCGCCTTCACGTCATCAGGGATAATGT 220067 Query 243996 CGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACA 244055 ||||||||||||||||||| |||| |||||| | | | ||||| || ||||||| Sbjct 220066 CGATGTTCTGCACCGAGCCGTTGTTCGCGATGATCATGTTCTTCATGTCGTCATTCCACA 220007 Query 244056 GGCCCAAGCGC-TCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGAC 244114 |||| ||| | | ||| | || ||| | | |||||||| ||||| || | Sbjct 220006 -GCCCGAGCTCGACGAGCTCACGGAGCAGCCACGGGCAGACCACCTGGAACTCGCCGGCG 219948 Query 244115 AGCACGCGGCGCTGGTAGAGGTTGCT 244140 || || || || ||||| |||||| Sbjct 219947 AGGACACGACGAGTGTAGATGTTGCT 219922 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 245077 GTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGC 245136 |||||| | || || | || || ||||||||| | ||||| ||||| | ||||| || Sbjct 218859 GTTCTTACGAAGATCGAGGAACTCGAAGACGTCGGCATGCCAAGGCTCTAGGTAGATGGC 218800 Query 245137 GAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGAT 245196 || ||| ||||| ||||||||||| |||||||| || | | || | | ||| Sbjct 218799 GAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTCGAATCGTAGAC 218740 Query 245197 GCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTA 245247 || || |||| || |||||||| || | ||| || |||||| ||| || Sbjct 218739 ACGGAGCATAGGAACGATGCCGTTCGAATAGCCATTAGTGCCCGAGATATA 218689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944324137789760