Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq606 152 1e-31 seq495 141 2e-28 seq1041 131 4e-25 seq124 86.0 1e-11 >seq606 Length=277477 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || || || | |||||||| || |||||||| ||||| | | Sbjct 253807 CCGCCACGGAGACGGAGGACAAGGTGGAGGGTGCTTTCCTTCTGGATATTGTAGTCAGAG 253748 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||| ||||||||||| ||| Sbjct 253747 AGCGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGAGGG 253688 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || || |||||||| || || | || || || ||| Sbjct 253687 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTATCGATCGTGTCCGAGGACTCGACT 253628 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | |||||||||||| || || || |||||||||||||||||||| Sbjct 253627 TCCAACGTGATCGTCTTGCCCGTGAGTGTCTTGACGAATATCTGCAT 253581 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| |||||| || || || || | || || || || ||| Sbjct 253207 TCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGCTGCTTGCCCGCAAAG 253148 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || ||||| || || || |||||||| ||||| || ||||| Sbjct 253147 ATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTA 253088 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||| || || ||||||||||| ||||| || |||| |||||||| Sbjct 253087 TCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAGGTCTTGACA 253028 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 253027 AAGATCTGCAT 253017 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 || || | |||||| || || || || || ||||||| || || || |||||||| | | Sbjct 253503 AGGTGGAGCGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGT 253444 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || ||||| |||| ||||| ||| || || || || ||||||||||| Sbjct 253443 TGCTTGCCGGCGAAAATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGATC 253384 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| || ||||| || || | || || || ||||| || ||||| ||||| || Sbjct 253383 TTCGCCTTGACGTTGTCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGCCC 253324 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 |||| ||||| ||||| |||||||| Sbjct 253323 GTCAACGTCTTAACGAAGATCTGCAT 253298 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || ||||||||||| || || || ||||| || || | ||| || || || ||| Sbjct 252775 CCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATGGTATCCGAGGACTCGACCTCG 252716 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| |||||||| ||||| |||||||| Sbjct 252715 AGGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 252672 >seq495 Length=337734 Score = 141 bits (156), Expect = 2e-28 Identities = 174/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| ||||| |||| ||| || || ||||| || || | Sbjct 131130 CATG-CCACCACGGAGACGAAGAACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAAT 131188 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || || |||| || ||||| || ||||||| |||||| || | Sbjct 131189 CCGAAAGAGTGCGGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGG---T 131245 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| || || || |||||||| || ||||| |||||||| || || | || | Sbjct 131246 CCGGGGGTATGCCCTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATTGTGTCCGAAG 131305 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| || || | |||||||||||| ||||| || ||||||||||| |||||||| Sbjct 131306 ATTCAACCTCCAACGTGATCGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 131360 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 || || | |||||| || || || || |||||||| | || ||||| || || || || Sbjct 130927 AGGTGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCAAC 130986 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || ||||| || |||||||| ||| ||||| || || ||||||||||| Sbjct 130987 TGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGATC 131046 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| || || || || || | || ||| || ||||||||||| || ||||||||| Sbjct 131047 TTCGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCCCG 131106 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| || || ||||| Sbjct 131107 GTAAGGGTCTTGACAAAAATTTGCAT 131132 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | ||| || || |||| || || || || ||||| ||||||| Sbjct 131642 CCGCCGCGCAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAA 131701 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || |||||||| || ||||| || ||| Sbjct 131702 AGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGGTCGGGCGGG 131761 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || || || || || | || ||| || ||| Sbjct 131762 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCCACT 131821 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| || || || |||||||| || |||||||| Sbjct 131822 TCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 131868 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | | ||| || ||||| || | || || || || ||| Sbjct 131450 TCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGCTGCTTACCAGCAAAG 131509 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| ||| || ||| || ||||| || ||||||||||| || || ||| Sbjct 131510 ATAAGACGCTGCTGA---TCCGGGGGAATACCTTCCTTGTCCTGGATTTTGGCCTTGACG 131566 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || || || || || || ||||| ||||||| ||||| Sbjct 131567 TTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCGGTCAACGTCTTC 131626 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 131627 ACGAAGATCTGCAT 131640 >seq1041 Length=164984 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || ||||| | Sbjct 54682 CCACCACGAAGGCGGAGGACAAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCAGAC 54741 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||| || || || ||| | || Sbjct 54742 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGATCAGGGGGA 54801 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| ||||| || || || | || || || || Sbjct 54802 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCAGAGGACTCGACC 54861 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||| || ||||||||||||||||| |||||||| Sbjct 54862 TCGAGCGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 54908 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||||||||||| || || || || || || | || || || ||||| Sbjct 54490 TCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCAGCTGCTTGCCCGCGAAA 54549 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || || || || || || ||||| || ||||| || || || Sbjct 54550 ATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTG 54609 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || |||||||||||||||||||| || || ||||||||| Sbjct 54610 TCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCCCAGTGAGGGTCTTGACG 54669 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 54670 AAAATCTGCAT 54680 >seq124 Length=125365 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 326171 ATTTCTTCGTTCTTCGTGATGCTTGCCACGGAT-GCATCGCGGACGTTCAATAGTTTTCC 326229 || || ||||||||| |||| || | | | | |||||||| ||||||| | ||||| Sbjct 97994 ATCTCCTCGTTCTTCATGAT-CTGGTCGTGCTTCGCATCGCGCACGTTCAGCAACTTTCC 97936 Query 326230 ACGAAGAGGGAACACTCCATATCTCTCGCGACCGACCACGGACAGCCCTGCGATTGCAAG 326289 |||||| ||||| || || | | ||||||||||| || || || || || || || Sbjct 97935 ACGAAGCGGGAAGACACCGAAGTTGTCGCGACCGACGACACCGAGACCAGCAATGGCGAG 97876 Query 326290 TGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTGCA 326328 || | |||||||| || ||||||| ||||| ||||| Sbjct 97875 TGCCCTGGCGGAATCACCTTCCGTCAAGATGAGCGTGCA 97837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179635114125128