Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq993 109 1e-18 seq1110 84.2 5e-11 >seq993 Length=568693 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 243544 GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAA 243603 || ||| | || ||| ||| |||||||||||| | | |||||| | || |||||||| Sbjct 489685 GATGCTCTGCCTTGCGCGCTCATTGGCATGAACGCCAAGCTCATGTGCCAATACATCGAG 489744 Query 243604 TTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAAC 243663 ||||| ||||| ||| | || |||| ||||| ||||||| |||| | || ||| Sbjct 489745 TTCGTTGCCGATCGCCTGCTCGTCGCCCTTGGAGATGAGAAGCAGTACGGCGTCACCAAC 489804 Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723 || || | ||| ||||| | || || || ||||| || || |||||||| || ||||| Sbjct 489805 CCGTTCGACTTCATGGACATGATCTCACTCCAAGGCAAGACCAACTTCTTTGAGAAGCGC 489864 Query 243724 GTC 243726 ||| Sbjct 489865 GTC 489867 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || || || |||||| | || || ||| | || |||||||| || || |||||||| | Sbjct 486887 CTCATCGGTATGAACGCAGACCTTATGTGCCAATACATCGAGTTTGTCGCCGACCGTTTG 486828 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || |||||||||| | || || ||| | | | |||||| || | ||| ||||| Sbjct 486827 CTCGTCGCGCTTGGGAACGAAAAGCACTACCGCGCGACGAACCCGTTCGACTTCATGGAT 486768 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||||||||| || || |||||||| || |||||||| Sbjct 486767 ATGATCTCGCTTCAAGGCAAGACCAACTTCTTTGAGAAGCGTGT 486724 >seq1110 Length=161251 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 59870 TTTGAGGGTGCGTTGAAACTCAAAGAAATCTCGTATATTCACGCAGAGGGGTTCCTGGGA 59929 || ||||| ||| | ||| |||| ||||||||||| || ||| | ||||| |||| | Sbjct 137941 TTGGAGGGCGCGCTCAAAATCAAGGAAATCTCGTACATGCACTCCGAGGGTATCCTCGCC 137882 Query 59930 GGCGAGTTGAAACACGGTCCCCTCGCACTCCTCGACGATAAAATCCCCGTCATC 59983 |||||| | || ||||| || ||||| ||| ||||||| || || || || ||| Sbjct 137881 GGCGAGCTCAAGCACGGCCCGCTCGCGCTCATCGACGAGAACATGCCGGTGATC 137828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102861969290600