Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq124 116 4e-21 seq993 105 8e-18 seq62 96.9 4e-15 seq506 87.8 2e-12 >seq124 Length=125365 Score = 116 bits (128), Expect = 4e-21 Identities = 223/319 (70%), Gaps = 20/319 (6%) Strand=Plus/Minus Query 172651 ATCCGTCATAATCATAAGCCGACCATAGCG-AAGCT--CGGAAACATCTTGATACTCCTT 172707 ||||||||||| ||| || || || || || ||| | ||| | | | || |||||||| Sbjct 98088 ATCCGTCATAAGCATGAGACGGCCGTAACGCAAGGTGCCGGTATC--CGTG-TACTCCTT 98032 Query 172708 ACCCTGTTGAAGACCCAAGATCTTCTTGA-GATCATTGAA-CTCTTGGTT-----TGATG 172760 || || | |||| ||||||||||| | || |||| ||| | ||| |||| Sbjct 98031 GTTGTGCTGCAAGCCCATGATCTTCTTGATGTTC--TGAATCTCCTCGTTCTTCATGATC 97974 Query 172761 TGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACAC 172820 || || | || | |||||||| || || |||| ||||| || ||||| |||| Sbjct 97973 TG-GTCGTGCTTC----GCATCGCGCACGTTCAGCAACTTTCCACGAAGCGGGAAGACAC 97919 Query 172821 CGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCAC 172880 || ||| || ||||| || ||| |||||||||| ||||| | | | |||||||||| Sbjct 97918 CGAAGTTGTCGCGACCGACGACACCGAGACCAGCAATGGCGAGTGCCCTGGCGGAATCAC 97859 Query 172881 CCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGT 172940 | ||||||| ||||||||| || | || | || ||| ||||| ||||| || || Sbjct 97858 CTTCCGTCAAGATGAGCGTGCAGTCGCCGGCTTTCCTCGTTCCCGCGTTGTTGGCGTCAG 97799 Query 172941 CCAACTTGGGAATACCAGT 172959 || ||||| || ||||| Sbjct 97798 ACAGCTTGGTCATGCCAGT 97780 >seq993 Length=568693 Score = 105 bits (116), Expect = 8e-18 Identities = 333/506 (66%), Gaps = 15/506 (3%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 ||||| || |||||||||||||| ||||| || || || ||||||||||| |||||| Sbjct 489515 CCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTC 489456 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | || || || ||||||||||| ||||| || || || Sbjct 489455 TTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCGACGGCTGCAAAA 489396 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC---AAACCACTTCATCGCCCAC 126241 |||| ||| ||||| ||||| | | || || |||| || ||| | ||||| Sbjct 489395 GCAACGAGGCGCTCCGCAAACGCG---GAGTTCTTGTCCGAAATCCAGCGGAGAGCCCAA 489339 Query 126242 TGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTTC 126300 | ||||| |||| || || |||| || | || || || || || | || | | | Sbjct 489338 TCGGCCTTCTTCTTAATGCAGGGGATAGTGTCAATGGCGTCGAACAGGTGCTCGCGCTGC 489279 Query 126301 TGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCAT-TT 126359 || || || |||||||| | || ||||| || || || ||| ||| | | | Sbjct 489278 TG-GGGGTCCTTGATGTAGGTGTCGATGAGGAGAGAGTACGTCTCGGAGTGAATGTTCTC 489220 Query 126360 CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCAA 126419 ||| || ||| | |||||||| |||| || || ||| || || | || | Sbjct 489219 CATCAT-AATCTGGAAACCGTAGAAACAGCGAGCCTCCGCCGCCTGAACTTCGTTGG-AG 489162 Query 126420 AATTGTTAT-TGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATA 126478 || ||| | || |||||| ||||| || ||||| | ||||| || || |||| Sbjct 489161 AACCGTTCTACGAGATTCTCGTTGACAATACCGTCGGATGCTGCAAAGAAGGCAAGGACG 489102 Query 126479 TACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGATCCTTC 126535 | ||||| | | || | || || | || | |||||||| | |||||||| Sbjct 489101 TGGGAAATGAAATGACGCTCGTCGTCATTGAGGCGGTTGTTCCAGTCATGGAGATCCTTG 489042 Query 126536 GAGAGATCTACCTCCTCCGCAGTCCA 126561 || || || | |||||| || ||||| Sbjct 489041 GAAAGGTCCATCTCCTCTGCCGTCCA 489016 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 ||||| || |||||||||||||| ||||| || || || ||||||||||| |||||| Sbjct 487081 CCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTC 487140 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | || || || |||||||| |||||||| || ||||| Sbjct 487141 TTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAAATTCCCTCGACGGCTGCGAAT 487200 Query 126185 GCAAAGAGACGCTCAGCAAAG 126205 |||| || | ||| | |||| Sbjct 487201 GCAACTAGCCTCTCCGAAAAG 487221 >seq62 Length=1243 Score = 96.9 bits (106), Expect = 4e-15 Identities = 222/332 (67%), Gaps = 2/332 (1%) Strand=Plus/Minus Query 8526 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTT-AGGGAATCCCCTCAAAATGAGGA 8584 || || || ||| ||||||||||||| ||||| || ||| || || || | ||| Sbjct 670 TACCAGGCGTCTACCTCGGAGATGTTCGGTAAGGTCCAGGCGATTCCG-CAGATCGAGAG 612 Query 8585 GACACCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGT 8644 || || || ||||| || | ||| ||||| | ||| | || || ||| | Sbjct 611 CACGCCTTTTTATCCGCGCAGCCCCTACGGCGTGGCCAAGCTCTATGCCCACTGGATGAC 552 Query 8645 GAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGA 8704 | || ||||| || ||||| || |||| | | ||| ||||||||||||||||| Sbjct 551 CATCAACTACCGCGAGTCCTACGGCATCTTCGGCACCAGCGGCATTCTCTTCAACCACGA 492 Query 8705 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAAT 8764 || || | ||||||| || |||||||| ||||||||||| | ||| | || Sbjct 491 ATCCCCGCTGCGTGGCCGCGAGTTCGTGACCCGCAAGATCACCGACAGCATCGCCAAGAT 432 Query 8765 CGTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGG 8824 | | ||| || ||| | | | |||| |||||| ||||| || | |||||||| Sbjct 431 CAAGGTGGGCAAGCTGGATGTGCTGCAGCTGGGCAACCTCGACGCCAAGCGCGACTGGGG 372 Query 8825 ACACGCCAAGGACTATGTTGAAGCCATGTGGC 8856 ||||||||| || || || | ||||||| Sbjct 371 CTTCGCCAAGGAATACGTCGAGGGTATGTGGC 340 >seq506 Length=319592 Score = 87.8 bits (96), Expect = 2e-12 Identities = 311/481 (65%), Gaps = 14/481 (3%) Strand=Plus/Minus Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 ||||||||| ||||||| | || || || || || |||| | |||||||| || Sbjct 219717 CCACATATCGTACTGGAGCTTGCCCTGCGACGCCGGGCTGCCCTGGTACGTCTCGTACGG 219658 Query 114163 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 114222 ||||| ||| |||| ||| |||||||||||| || ||||| || || ||||| || Sbjct 219657 GCCCTGCTCCTTGGCCATCTCGCAGCTCGCCTCGACTGCAGCGTGGTAGATGGTCTCGAA 219598 Query 114223 AATGCGAGCATTCA--TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATA 114280 || | |||| || | | |||||| | || || || | || || | || Sbjct 219597 GATCTGCAGGTTCAGCTTACGT--GCCTCGACCGAGTCGAATGGCAGCCGCAGCGCCATG 219540 Query 114281 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTT 114340 || | |||||||| || || ||||||| |||||| || || || | ||| || || || Sbjct 219539 AACGCGTCCGCGAGGCCCTGCACACCGATGCCAATCGGACGGTGGCGCATGTTCGAGTTC 219480 Query 114341 CGAGCGGTCTCCA--CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 114398 || || || | |||| || | ||| |||||| | | || || || | || Sbjct 219479 CGGGC-CTCAGGAATCGGG-TAGTAGTTCGCATCGATGATGCGGTTCAGGTTGAACGCGA 219422 Query 114399 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT 114458 | ||||||| || || || ||| | | | | | | ||| | ||| || Sbjct 219421 CGACCTTTGCGACGTCGTGGAGCCTCTGGAAGTTGTACTTGCCACCCTC------GATGA 219368 Query 114459 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 114518 || || || || || || || || || || || | ||||||||| | | ||||| Sbjct 219367 ACGACGGCAGCGCAATAGAAGCAAGGTTGCAGACGGCGGTCTCATCGGGTGCGGAGTACT 219308 Query 114519 CTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACT 114578 | || || ||||| |||| || || ||| ||||| || | ||||| || || |||| Sbjct 219307 CGATGATCTCCGTGCACAGGTTAGAGGACTTGATGGTACCAAGGTTCTGCTGGTTGGACT 219248 Query 114579 T 114579 | Sbjct 219247 T 219247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597344072210080