Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq495 98.7 1e-15 seq606 96.9 3e-15 seq1041 95.1 1e-14 seq406 89.7 5e-13 >seq495 Length=337734 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||||| | ||| || || |||| || || || || ||||| ||||| || | Sbjct 131641 ACCGCCGCGCAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGA 131700 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| || |||||||||||||| | || || |||||||||||||| || Sbjct 131701 AAGAGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGGTCGGGCGG 131760 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCC 64393 || || || || || || || || ||| ||| || | || | ||| || ||| Sbjct 131761 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATCGTGT--CCGACGACTCC 131818 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| | || | |||||||| || | || || || || || ||||| Sbjct 131819 ACTTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 131868 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 || |||| || || || || || |||||||| || | | || ||| |||| |||||| Sbjct 131435 AGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGC 131494 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| || ||| | || || |||||||| || || ||||| ||||| || || || ||| Sbjct 131495 TGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATT 131554 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||| || || | || || | || || || | || | |||||||||| Sbjct 131555 TTGGCCTTGACGTTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCG 131614 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || ||||| || ||||| Sbjct 131615 GTCAACGTCTTCACGAAGATCTGCAT 131640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || |||||||| || || | | |||||| | || || | |||||||||||| || Sbjct 130942 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAAA 131001 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| |||||||| ||||| || || || || || || || || || ||| ||| Sbjct 131002 ATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGATCTTCGCCTTGACATTG 131061 Query 64373 TCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTA 64430 || | || | ||| || || ||||| | || | |||||| ||||| | || || | Sbjct 131062 TCAATCGTGT--CCGACGACTCGACTTCGAGCGTAATGGTCTTCCCGGTAAGGGTCTTGA 131119 Query 64431 CGAAAATTTGCAT 64443 | ||||||||||| Sbjct 131120 CAAAAATTTGCAT 131132 >seq606 Length=277477 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | | ||| || ||||||| || ||||||||||| || Sbjct 253488 TCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGTTGCTTGCCGGCGAAA 253429 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | |||||||| ||||| ||||| || || || || || || || ||| || Sbjct 253428 ATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGATCTTCGCCTTGACGTTG 253369 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | |||||||| | ||| | |||||||| ||||| || || ||| Sbjct 253368 TCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGCCCGTCAACGTCTTAACG 253309 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 253308 AAGATCTGCAT 253298 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 || || | |||||| || || || ||||||||||| | || || || | || || ||| Sbjct 253222 AGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGC 253163 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||||||| ||| | || || ||||||||||| ||||| || || || || || || || Sbjct 253162 TGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATC 253103 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||| || || | || || | || || || | || | ||||||||| Sbjct 253102 TTCGCCTTGACGTTATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCA 253043 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || || || || ||||| Sbjct 253042 GTCAAGGTCTTGACAAAGATCTGCAT 253017 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311 ||| || || || ||||| || | || |||||| |||| || ||||||||||| || | Sbjct 253772 TTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAA 253713 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371 ||||| ||||| ||||||||||| || || || || || || || || ||| || Sbjct 253712 GATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACGTT 253653 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | || || || || ||||| | || | |||||||| || | || || || Sbjct 253652 ATCGATCGTGTCCGAGGACTCGACTTCCAACGTGATCGTCTTGCCCGTGAGTGTCTTGAC 253593 Query 64432 GAAAATTTGCAT 64443 ||| || ||||| Sbjct 253592 GAATATCTGCAT 253581 >seq1041 Length=164984 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || || | ||| || || || || |||||||| || | | ||||| |||| Sbjct 54697 AGGACAAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCC 54756 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | ||||| || ||||| || || ||||| || || || || Sbjct 54757 TCCAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGATCAGGGGGAATGCCCTCCTTGTCC 54816 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || ||| || || || || | || | |||| Sbjct 54817 TGGATCTTCGCCTTCACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGCGTGATGGTC 54876 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| ||| || ||||| || ||||| Sbjct 54877 TTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 54908 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||||||||| | | ||||| | || ||||||||||| || Sbjct 54992 GTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTGCTTCCCC 55051 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || |||||||||||||||||||| || || || || || || ||| ||| Sbjct 55052 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTG 55111 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || | || || || | ||| | ||||||||| || | || Sbjct 55112 ACGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 55171 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 55172 TTCACGAAGATCTGCAT 55188 >seq406 Length=388386 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | |||||| || || |||||||||||||| | ||| ||||| |||| Sbjct 234848 AGCACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAATCGGAGACCGTGCGACCGTCC 234789 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||||| | ||| | || || ||||||||| ||| ||| Sbjct 234788 TCGAGCTGCTTACTGGCGAAGATCAGGCGCTGCTGGCCGGAAGG 234745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499636830665440