Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq506 98.7 1e-15 >seq506 Length=319592 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 95292 CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGAC 95351 ||||||||| || ||||||||| || || || ||| | |||||| |||||||||| Sbjct 220044 CAACGGCTCGGTGCAGAACATCGACATTATCCCTGATGACGTGAAGGCGATCTACAAGAC 220103 Query 95352 CGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCAT 95411 ||| ||||||||| ||||| | | ||||||| |||||| | |||||| | ||||| Sbjct 220104 CGTCTGGGAGATCTCGCAGAAGAAGGTCCTCGACCTCGCGGCGGACCGCGGCGCGTTCAT 220163 Query 95412 CTGCCAG 95418 ||||||| Sbjct 220164 CTGCCAG 220170 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 94067 GTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCT 94126 |||| || ||| || || |||||| || |||||| |||| ||||||||||| |||| Sbjct 218684 GTTCGTATATCTCGGGCACTAATGGCTATTCGAACGGCATCGTTCCTATGCTCCGTGTCT 218743 Query 94127 TCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGG 94186 | | |||| || ||||| ||||||||||| | | | ||| | ||||| Sbjct 218744 ACGATTCGACGGCCCGTTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTCGCCA 218803 Query 94187 TCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACG 94246 |||| || ||||| ||||| || ||||| | ||| |||| || || |||||||| | Sbjct 218804 TCTACCTAGAGCCTTGGCATGCCGACGTCTTCGAGTTCCTCGATCTTCGTAAGAACCATG 218863 Query 94247 GCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTT 94304 | || || || | || | ||||||||||| || | ||| | || || ||||| Sbjct 218864 GTAAAGAGGAGGTTCGCGCTCGTGACCTCTTCTATGCATTGTGGATTCCGGATCTTTT 218921 Score = 91.5 bits (100), Expect = 1e-13 Identities = 296/452 (65%), Gaps = 21/452 (5%) Strand=Plus/Plus Query 94726 TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCA 94785 || ||||||||| | | ||||| ||||| |||||| | || ||||| |||||| Sbjct 219427 TTCAACCTGAACCGCATCATCGATGCGAACTACTACCCGATTCCTGAGGCCCGGAACTCG 219486 Query 94786 AACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATG 94845 ||| || || || || || |||||||| || ||||| ||||||||||| | || | Sbjct 219487 AACATGCGCCACCGTCCGATTGGCATCGGTGTGCAGGGCCTCGCGGACGCGTTCATGGCG 219546 Query 94846 ATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGT---TTGAATTTGAACATATTCGAA 94902 |||| ||||| | |||||| ||||| ||| || |||| || | || ||||| Sbjct 219547 CTGCGGCTGCCATTCGACTCGGTCGA---GGCACGTAAGCTGAACCTGCAGATCTTCGAG 219603 Query 94903 AGCATTTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCC 94961 | ||| || ||| || | || | | | | | | |||||| ||| || || Sbjct 219604 ACCATCTACCACGCTGCAGTCGAGGCGAGCTG-CGAGATGGCCA---AGGAGCAGGGCCC 219659 Query 94962 ACACGAATCGTTCC---GCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTG 95018 |||| ||| || || | || | | | ||||||| | |||| ||| | || Sbjct 219660 GTACGAGACGTACCAGGGCAGCCCGGCGTCG---CAGGGCAAGCTCCAGTACGATATGTG 219716 Query 95019 GGGTGTGAAGCCCTCGGGTCTGTACGACTGG--GAAGCTCTACGCGCTGATGTTATCAAA 95076 |||||| | ||| | | || | || ||| || ||| | ||| | ||| | || Sbjct 219717 GGGTGTCACGCCAACAGACCTCTGGGATTGGGCGAGTCTCAAGGCG--AAGGTTGCCCAA 219774 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 | ||| ||| ||| |||| || |||| || ||||| || || || || ||||| Sbjct 219775 TATGGTTTGAGGAACTCGCTCCTGCTGGCTCCTATGCCTACTGCGTCGACTAGCCAGATT 219834 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCAC 95168 || ||||||||||| | ||||| |||| ||| Sbjct 219835 CTGGGCAACAACGAATGCTTCGAGCCCTACAC 219866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494715309164960