Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq606 111 2e-19 seq495 107 2e-18 seq1041 91.5 1e-13 seq993 87.8 2e-12 >seq606 Length=277477 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| ||| | ||||| |||||||| || || || | | Sbjct 253210 GACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGCTGCTTGCCCGCA 253151 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||||||||| ||||| || ||||| ||| || || | Sbjct 253150 AAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACG 253091 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| |||||| ||||||| ||| | || || ||||||| || || Sbjct 253090 TTATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAGGTCTTG 253031 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 253030 ACAAAGATCTGCAT 253017 >seq495 Length=337734 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || |||||| |||||| || || ||||| | | Sbjct 131447 GACTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGCTGCTTACCAGCA 131506 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || ||||| || |||||||| ||||| |||||| || | Sbjct 131507 AAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATTTTGGCCTTGACG 131566 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||| ||||| | || | || || || |||| || || Sbjct 131567 TTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCGGTCAACGTCTTC 131626 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 131627 ACGAAGATCTGCAT 131640 >seq1041 Length=164984 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || ||||||||||| || || || |||||| || || || || | Sbjct 54713 TTGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCG 54772 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| || || || || || || || || || || ||||| ||| || || | Sbjct 54773 CGAAGATGAGGCGTTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCA 54832 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | ||||| ||||||| ||| | || || ||||||||||| Sbjct 54833 CATTG-TCGATGGTGTCAGAGGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGAGTC 54891 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 54892 TTGACGAAGATCTGCAT 54908 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || || |||||| || ||| || ||||| || || || || | Sbjct 54487 GACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCAGCTGCTTGCCCGCG 54546 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || || ||||| ||||| || || ||||| || ||||| ||| | || | || | Sbjct 54547 AAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCC-TGAATCTTCGCCTTGAC 54605 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | ||||| | ||||| ||||||| ||| | ||| || ||||| || || | Sbjct 54606 ATTGT-CAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCCCAGTGAGGGTCT 54664 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 54665 TGACGAAAATCTGCAT 54680 >seq993 Length=568693 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC--ATGTGCGAGTACATCGAGT 52707 || || |||||| || | || |||||||| || || |||||| | |||||||||| Sbjct 486902 GCACTCCCGGTCTCTCTCATCGGTATGAACGC--AGACCTTATGTGCCAATACATCGAGT 486845 Query 52708 TTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATC 52767 |||| || || ||| || | || ||| ||| | |||| ||| | ||| || | Sbjct 486844 TTGTCGCCGACCGTTTGCTCGTCGCGCTTGGGAACGAAAAGCACTACCGCGCGACGAACC 486785 Query 52768 CGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAG 52827 |||| || || ||| | | || |||||| | |||||||||||||| || |||||||| | Sbjct 486784 CGTTCGACTTCATGGATATGATCTCGCTTCAAGGCAAGACCAACTTCTTTGAGAAGCGTG 486725 Query 52828 T 52828 | Sbjct 486724 T 486724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496254484614720