Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq495 123 2e-23 seq606 114 1e-20 seq1041 109 5e-19 seq993 84.2 2e-11 >seq495 Length=337734 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||||||||| ||| | || ||| || || ||||| || || Sbjct 131672 GTAGACTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCCTCGAGCTGCTTGCCG 131731 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| ||||| || ||||||||||||||| ||| || |||| Sbjct 131732 GCGAAGATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 131791 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||||| ||| ||||||| ||| | ||| ||||| || || || Sbjct 131792 ACATTGTCAATCGTGTCCGACGACTCCACTTCGAGGGTGATCGTCTTGCCCGTGAGGGTC 131851 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 131852 TTGACAAAGATCTGCATG 131869 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| | ||||| ||| |||||||| ||||| Sbjct 131164 GTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCCTCTAGCTGCTTTCCG 131223 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| |||||||| || || |||||||||||||| ||| || ||| ||| Sbjct 131224 GCAAAGATCAAACGCTGCTGGTCCGGGGGTATGCCCTCCTTATCCTGAATCTTCGCCTTC 131283 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||||||| | || || || | || | ||| || ||||| || || Sbjct 131284 ACGTTG-TCAATTGTGTCCGAAGATTCAACCTCCAACGTGATCGTCTTTCCGGTGAGTGT 131342 Query 127096 TTTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 131343 CTTGACGAAGATCTGCATG 131361 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || || ||| || || || ||||| || ||| Sbjct 131444 GTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGCTGCTTACCA 131503 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||||| || || || || ||||||||| |||||| |||| Sbjct 131504 GCAAAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATTTTGGCCTTG 131563 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | | |||||| || | ||| | || |||||||||| || Sbjct 131564 ACGTTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCGGTCAACGTC 131623 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 131624 TTCACGAAGATCTGCAT 131640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| || || || | ||||| ||| || | ||| || || ||| | Sbjct 130941 CTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCGAA 131000 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 || | |||||||||||||| || || |||||||| ||| ||| ||| ||||| | Sbjct 131001 AATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGATCTTCGCCTTGACATT 131060 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||||||| ||||||||||| || | || || ||||| || || || || Sbjct 131061 GTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCCCGGTAAGGGTCTTGAC 131120 Query 127102 AAAAATCTGCATG 127114 |||||| |||||| Sbjct 131121 AAAAATTTGCATG 131133 >seq606 Length=277477 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||||||| | ||| ||| ||| || ||||| || || Sbjct 253214 CGTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGCTGCTTGCC 253155 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 || |||||| |||||||| || ||||| || |||||||||||| ||| ||| ||| Sbjct 253154 CGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTCGCCTT 253095 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | |||| ||||| | |||||| |||| || | || ||||| |||| || Sbjct 253094 GACGTTATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAAGGT 253035 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 253034 CTTGACAAAGATCTGCAT 253017 Score = 109 bits (120), Expect = 5e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || ||||| ||||| ||| | || ||| || || || || || || ||| | Sbjct 253489 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGACCGTCTTCGAGTTGCTTGCCGGCGAA 253430 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 ||||| |||||||||||||| || ||||||||||| ||| ||| ||| ||||| ||| Sbjct 253429 AATCAAGCGCTGCTGATCGGGCGGAATGCCCTCCTTATCCTGGATCTTCGCCTTGACGTT 253370 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| ||||||| | ||| ||||| | || | || ||||| |||| || || | Sbjct 253369 G-TCGATCGTGTCCGAAGACTCCACTTCAAGAGTGATAGTCTTGCCCGTCAACGTCTTAA 253311 Query 127101 CAAAAATCTGCATG 127114 | || ||||||||| Sbjct 253310 CGAAGATCTGCATG 253297 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982 || || || |||||||| || | |||||| || || ||||| || || ||| || Sbjct 253771 TCCTTCTGGATATTGTAGTCAGAGAGCGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAG 253712 Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGT 127042 || | ||||| || |||||||| ||||||||||||||| || || ||| | | Sbjct 253711 ATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTA 253652 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 |||| ||||||| ||||||||| | || | ||| ||||| || || || || || Sbjct 253651 TCGATCGTGTCCGAGGACTCGACTTCCAACGTGATCGTCTTGCCCGTGAGTGTCTTGACG 253592 Query 127103 AAAATCTGCATG 127114 || ||||||||| Sbjct 253591 AATATCTGCATG 253580 >seq1041 Length=164984 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| || || |||||| || || ||||| || || Sbjct 54711 CGTTGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCC 54770 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||| | || |||||||| || || ||||||||||||||| ||| ||| ||| Sbjct 54771 CGCGAAGATGAGGCGTTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTT 54830 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| |||||| | |||||| |||| || | || ||||| |||||||| Sbjct 54831 CACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGAGT 54890 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 54891 CTTGACGAAGATCTGCAT 54908 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||||||| | |||||| ||| || ||||| || || Sbjct 54992 GTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGCTGCTTCCCC 55051 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| |||||||| ||||||||||||||| ||| || |||| Sbjct 55052 GCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTG 55111 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | | |||||| || | || | || ||||| || || || Sbjct 55112 ACGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 55171 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 55172 TTCACGAAGATCTGCATG 55189 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || ||||| || ||| || || ||| ||| || ||||| || || Sbjct 54484 GTAGACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCAGCTGCTTGCCC 54543 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | |||||||| ||||| || || |||||||||||| || ||| |||| Sbjct 54544 GCGAAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGAATCTTCGCCTTG 54603 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||||| | |||||| |||| || | ||| || || || || || Sbjct 54604 ACATTGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCCCAGTGAGGGTC 54663 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 54664 TTGACGAAAATCTGCAT 54680 >seq993 Length=568693 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 47384 CGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACAT 47443 ||| ||||| || || | ||| | | || |||||||| || | ||| | | ||||| Sbjct 486909 CGCAGAGGCACTCCCGGTCTCTCTCATCGGTATGAACGCAGACCTTATGTGCCAATACAT 486850 Query 47444 CGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGA 47503 ||| |||||||||||||| ||||||| ||| | | ||| |||| | | Sbjct 486849 CGAGTTTGTCGCCGACCGTTTGCTCGTCGCGCTTGGGAACGAAAAGCACTACCGCGCGAC 486790 Query 47504 GAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAA 47563 ||| || ||||| || ||| | | || ||||| | |||||||||||||| || ||||| Sbjct 486789 GAACCCGTTCGACTTCATGGATATGATCTCGCTTCAAGGCAAGACCAACTTCTTTGAGAA 486730 Query 47564 GCGCGT 47569 ||| || Sbjct 486729 GCGTGT 486724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475493215762240