Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1041 96.9 3e-15 seq495 87.8 2e-12 seq606 82.4 7e-11 >seq1041 Length=164984 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 || || || || |||||||| ||||| || |||||| | || | ||| || | Sbjct 54983 AGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGC 55042 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | || |||||||| || |||||||| || || || || || Sbjct 55043 TGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATC 55102 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 ||| |||| || | || | |||||||||||||||||| || ||||| | || ||||| Sbjct 55103 TTTGCCTTGA-CGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCC 55161 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || ||||| Sbjct 55162 CGTGAGGGTCTTCACGAAGATCTGCAT 55188 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCA 45192 || || || || || ||||| ||||||||||| ||| ||| | | || ||| |||| Sbjct 54475 AGGTGAAGAGTAGACTCCTTCTGGATATTATAGTCG--GACAGAGTCCGACCATCCTCCA 54532 Query 45193 ATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAA 45252 || || || ||| | || | || |||||||| |||||||| || || || || |||| Sbjct 54533 GCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGAA 54592 Query 45253 TTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGC 45312 | || |||| || | ||||| ||||||||||| ||||| || | ||| || | Sbjct 54593 TCTTCGCCTTGACATTGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCC 54652 Query 45313 CGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || ||||| ||||| Sbjct 54653 CAGTGAGGGTCTTGACGAAAATCTGCAT 54680 >seq495 Length=337734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| || || || ||| | || | || ||||| || ||||| || || || || Sbjct 130977 ATCCTCCAACTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTT 131036 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||| || || || |||| || | ||||| || |||||||||||||| |||| Sbjct 131037 ATCCTGGATCTTCGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAAT 131096 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || || || |||||||||||||| Sbjct 131097 GGTCTTCCCGGTAAGGGTCTTGACAAAAATTTGCAT 131132 >seq606 Length=277477 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 45135 AGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAAT 45194 || || ||||| || ||||| ||||| || |||||| || || | ||| || | Sbjct 253222 AGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGC 253163 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || || | |||| || ||||||||||| || || || || || || || || Sbjct 253162 TGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATC 253103 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | |||||||| |||||||| ||||| || | || ||||| Sbjct 253102 TTCGCCTTGA-CGTTATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCC 253044 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || || ||||| || ||||| Sbjct 253043 AGTCAAGGTCTTGACAAAGATCTGCAT 253017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451995990548960