Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq993 107 2e-18 seq124 107 2e-18 seq62 105 8e-18 seq506 89.7 6e-13 >seq993 Length=568693 Score = 107 bits (118), Expect = 2e-18 Identities = 333/504 (66%), Gaps = 11/504 (2%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||| || |||||||||||||| ||||| || || || ||||||||||| |||||| Sbjct 489515 CCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTC 489456 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || ||||| ||||||||||| ||||| || || || Sbjct 489455 TTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAGATACCCTCGACGGCTGCAAAA 489396 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA-CCACTTCATCGCCCACTG 127716 |||| || ||||| ||||| | | | | |||| ||| ||| | ||||| | Sbjct 489395 GCAACGAGGCGCTCCGCAAACGCG-GAGTTCTTGTCCGAAATCCAGCGGAGAGCCCAATC 489337 Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTTCTG 127775 ||||| |||| || || |||| || | || || || || || | || | | ||| Sbjct 489336 GGCCTTCTTCTTAATGCAGGGGATAGTGTCAATGGCGTCGAACAGGTGCTCGCGCTGCTG 489277 Query 127776 ATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCAT-TTCA 127834 || || |||||||| | || ||||| || || || ||| ||| | | | || Sbjct 489276 -GGGGTCCTTGATGTAGGTGTCGATGAGGAGAGAGTACGTCTCGGAGTGAATGTTCTCCA 489218 Query 127835 TTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCAAAA 127894 | || ||| | |||||||| |||| || || ||| || || | || | || Sbjct 489217 TCAT-AATCTGGAAACCGTAGAAACAGCGAGCCTCCGCCGCCTGAACTTCGTTGG-AGAA 489160 Query 127895 TTGTTAT-TGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATATA 127953 ||| | || |||||| ||||| || ||||| | ||||| || || |||| | Sbjct 489159 CCGTTCTACGAGATTCTCGTTGACAATACCGTCGGATGCTGCAAAGAAGGCAAGGACGTG 489100 Query 127954 CTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCGAGATCCTTTGA 128010 ||||| | | || | || || | || | |||||||| | ||||||||| || Sbjct 489099 GGAAATGAAATGACGCTCGTCGTCATTGAGGCGGTTGTTCCAGTCATGGAGATCCTTGGA 489040 Query 128011 GAGATCTACCTCCTCCGCAGTCCA 128034 || || | |||||| || ||||| Sbjct 489039 AAGGTCCATCTCCTCTGCCGTCCA 489016 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||| || |||||||||||||| ||||| || || || ||||||||||| |||||| Sbjct 487081 CCCTCATCGCGGGAGATGAGTTCGTTCGAAAACGTGAGGCCGGGCATGAGACCACGCTTC 487140 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || ||||| |||||||| || ||||| || ||||| Sbjct 487141 TTGAGCCAGAAGATAGAGGCGAAGGAGCCGGAGAAGAAAATTCCCTCGACGGCTGCGAAT 487200 Query 127658 GCAAATAGACGCTCGGCAAAG 127678 |||| ||| | ||| | |||| Sbjct 487201 GCAACTAGCCTCTCCGAAAAG 487221 >seq124 Length=125365 Score = 107 bits (118), Expect = 2e-18 Identities = 221/319 (69%), Gaps = 20/319 (6%) Strand=Plus/Minus Query 176671 ATCCGTCATAATCATGAGCCGACCATAGCG-AAGCT--CGGAAACATCTTGATAATCCTT 176727 ||||||||||| |||||| || || || || ||| | ||| | | | || || ||||| Sbjct 98088 ATCCGTCATAAGCATGAGACGGCCGTAACGCAAGGTGCCGGTATC--CGTG-TACTCCTT 98032 Query 176728 ACCTTGTTGAAGACCCAAAATCTTCTTGA-GATCATTGAA-CTCTTGGTT-----TGATG 176780 || || | |||| |||||||||| | || |||| ||| | ||| |||| Sbjct 98031 GTTGTGCTGCAAGCCCATGATCTTCTTGATGTTC--TGAATCTCCTCGTTCTTCATGATC 97974 Query 176781 TGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACAC 176840 || || | || | || ||||| || || |||| || || || ||||| |||| Sbjct 97973 TG-GTCGTGCTTC----GCATCGCGCACGTTCAGCAACTTTCCACGAAGCGGGAAGACAC 97919 Query 176841 CGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCAC 176900 || ||| || ||||| || ||| ||||||||||| ||||| | | | |||||||||| Sbjct 97918 CGAAGTTGTCGCGACCGACGACACCGAGACCAGCAATGGCGAGTGCCCTGGCGGAATCAC 97859 Query 176901 CCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGT 176960 | ||||||| ||||||||| || | || | || ||| ||||| ||||| || || Sbjct 97858 CTTCCGTCAAGATGAGCGTGCAGTCGCCGGCTTTCCTCGTTCCCGCGTTGTTGGCGTCAG 97799 Query 176961 CCAACTTGGGAATACCAGT 176979 || ||||| || ||||| Sbjct 97798 ACAGCTTGGTCATGCCAGT 97780 >seq62 Length=1243 Score = 105 bits (116), Expect = 8e-18 Identities = 224/332 (67%), Gaps = 2/332 (1%) Strand=Plus/Minus Query 10441 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTT-AGGGAATCCCCACAAAATGAGGA 10499 || || || ||| ||||||||||||| ||||| || ||| || || || | ||| Sbjct 670 TACCAGGCGTCTACCTCGGAGATGTTCGGTAAGGTCCAGGCGATTCCG-CAGATCGAGAG 612 Query 10500 GACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGT 10559 ||||| || ||||| || | ||| ||||| | ||| | || || ||| | Sbjct 611 CACGCCTTTTTATCCGCGCAGCCCCTACGGCGTGGCCAAGCTCTATGCCCACTGGATGAC 552 Query 10560 GAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGA 10619 | || || ||||| ||||| || |||| | | ||| ||||||||||||||||| Sbjct 551 CATCAACTACCGCGAGTCCTACGGCATCTTCGGCACCAGCGGCATTCTCTTCAACCACGA 492 Query 10620 GTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAAT 10679 || || | ||||||| || |||||||| ||||||||||| | ||| | || Sbjct 491 ATCCCCGCTGCGTGGCCGCGAGTTCGTGACCCGCAAGATCACCGACAGCATCGCCAAGAT 432 Query 10680 CGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGG 10739 | || ||| || ||| | | | |||| |||||| ||||| || | |||||||| Sbjct 431 CAAGGTGGGCAAGCTGGATGTGCTGCAGCTGGGCAACCTCGACGCCAAGCGCGACTGGGG 372 Query 10740 ACACGCCAAGGACTATGTTGAAGCCATGTGGC 10771 ||||||||| || || || | ||||||| Sbjct 371 CTTCGCCAAGGAATACGTCGAGGGTATGTGGC 340 >seq506 Length=319592 Score = 89.7 bits (98), Expect = 6e-13 Identities = 312/482 (65%), Gaps = 14/482 (3%) Strand=Plus/Minus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 |||||||||| ||||||| | || || ||||| || |||| | ||||| || | Sbjct 219718 CCCACATATCGTACTGGAGCTTGCCCTGCGACGCCGGGCTGCCCTGGTACGTCTCGTACG 219659 Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 |||||| ||| |||| ||| |||||||||||| || ||||| || || ||||| | Sbjct 219658 GGCCCTGCTCCTTGGCCATCTCGCAGCTCGCCTCGACTGCAGCGTGGTAGATGGTCTCGA 219599 Query 116183 AAATGCGAGCATTCA--TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAAT 116240 | || | |||| || | | |||||| | || || || | || || | || Sbjct 219598 AGATCTGCAGGTTCAGCTTACGT--GCCTCGACCGAGTCGAATGGCAGCCGCAGCGCCAT 219541 Query 116241 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 116300 || | |||||||| || || ||||||| |||||| || || || | ||| || || || Sbjct 219540 GAACGCGTCCGCGAGGCCCTGCACACCGATGCCAATCGGACGGTGGCGCATGTTCGAGTT 219481 Query 116301 TCGAGCGGTCTCCA--CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 116358 || || || | |||| || | ||| |||||| | | || || || | | Sbjct 219480 CCGGGC-CTCAGGAATCGGG-TAGTAGTTCGCATCGATGATGCGGTTCAGGTTGAACGCG 219423 Query 116359 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 116418 || ||||||| || || || ||| | | | | | | ||| | ||| || Sbjct 219422 ACGACCTTTGCGACGTCGTGGAGCCTCTGGAAGTTGTACTTGCCACCCTC------GATG 219369 Query 116419 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 116478 || || || || || || || || || || || | ||||||||| | | |||| Sbjct 219368 AACGACGGCAGCGCAATAGAAGCAAGGTTGCAGACGGCGGTCTCATCGGGTGCGGAGTAC 219309 Query 116479 TCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 116538 || || || ||||| |||| || || ||| ||||| || | ||||| || || ||| Sbjct 219308 TCGATGATCTCCGTGCACAGGTTAGAGGACTTGATGGTACCAAGGTTCTGCTGGTTGGAC 219249 Query 116539 TT 116540 || Sbjct 219248 TT 219247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613497414560160