Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq993 111 3e-19 seq506 91.5 2e-13 >seq993 Length=568693 Score = 111 bits (122), Expect = 3e-19 Identities = 311/471 (66%), Gaps = 10/471 (2%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || || ||||| ||||||||| |||| ||||| || || ||||||| ||||| || Sbjct 487051 AAGAGTAGGCAGGCAAAGTCGGTATGCATGCCCTCATCGCGGGAGATGAGTTCGTTCGAA 487110 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | ||||||| ||||||| |||||| |||||||| || || | || || | ||| Sbjct 487111 AACGTGAGGCCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGAGCCG 487170 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAG-GCGTT 160092 || || || ||||| ||||| || || || || |||||||| | |||||| | || Sbjct 487171 GAGAAGAAAATTCCCTCGACGGCTGCGAATGCAACTAGCCTCTC-CGAAAAGACAGAATT 487229 Query 160093 GGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTC 160152 ||| |||| | | ||||| ||||||||||| |||||| || || ||| Sbjct 487230 CTCGTCTGCTATCCAGCGTAACGCCCAGTCAGCCTTCTTCTTGATGCAAGGTATTGTCTC 487289 Query 160153 GACGGCGTTAAACA-ATCTGTCCTGCTCCTTCACA---TCCTTGATCAGAGTAGCAATCA 160208 | |||| || | || | |||| ||| |||||||| || | || | Sbjct 487290 TATAGCGTCGAAGAGGAAAGTGC-GCTC---GACAGGGTCCTTGATGTATGTGTCGATGA 487345 Query 160209 GCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATG 160268 | |||||| | |||| ||||||||||| || ||||| ||| |||||| | Sbjct 487346 GGAGGGAGTACGTCTCTGAATGCACATTTTCAATCATGATCTGGAAGCCGTAGAAGCAGC 487405 Query 160269 TCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACC 160328 ||||| ||| ||||| | | ||||| | | ||||| | || || | | Sbjct 487406 GGGCCTCAGCCGCCTGGACCTCATTGGAGAACCGCTCGACGAGATTCTCGTTGACAATGC 487465 Query 160329 CGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGT 160379 |||| | || || ||||| || | ||| | |||| |||||||| ||||| Sbjct 487466 CGTCCGAAGCGGCGAAGAAGGCAAGCACATATGAGAGGAAATGTCGCTCGT 487516 >seq506 Length=319592 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 203841 TGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGG 203900 |||| || ||||||| || || | |||| || | | | ||| ||||||||||| | Sbjct 220318 TGTCGACAGTGAACTTGATCGCCTGTGCGGCGGGGCGCGTACGCAGGTAGTACATGCCCG 220259 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA-CGTTGGGG 203959 |||| |||||||||| ||||||||| | ||||||| | || || | || || || | Sbjct 220258 TCTTCAGGCCCTTCTTCCACCCGTAGAAGTGCATGCTCGTCAATTGACCCATAGTCGGCG 220199 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGC 204018 | | || ||| | ||| || ||||| ||| |||| || ||||| || || || || Sbjct 220198 CCTG-CAGGTGCACGTTGAGGGACTGTGACTGGCAGATG-AACGCGCCGCGGTCCGCCGC 220141 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 | | || | |||||||||| |||||||| || |||||| Sbjct 220140 GAGGTCGAGGACCTTCTTCTGCGAGATCTCCCAGACGGTCTTG 220098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795142517274560