Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Grammothele_20lineata_20[genbank_20GCA_5F002150815.2_202017-06-20] 1,276 sequences; 42,856,078 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq495 143 6e-29 seq606 138 3e-27 seq1041 132 1e-25 seq576 104 6e-17 seq855 93.3 1e-13 seq428 87.8 4e-12 >seq495 Length=337734 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| |||||||| |||| |||||| || | | ||| | ||||| Sbjct 131149 AGAACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCATCC 131208 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||| ||||| | ||||||||||||||| || || || ||| Sbjct 131209 TCTAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCCGGGGGTATGCCCTCCTTATCC 131268 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| || | ||||| | | ||| || ||||||||||||||| Sbjct 131269 TGAATCTTCGCCTTCACGTTGTCAATTGTGTCCGAAGATTCAACCTCCAACGTGATCGTC 131328 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 131329 TTTCCGGTGAGTGTCTTGACGAAGATCTG 131357 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || || |||||||| || | |||||||| | | ||| | || || Sbjct 131657 AGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCC 131716 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| || ||||||||||| || || || || ||| Sbjct 131717 TCGAGCTGCTTGCCGGCGAAGATTAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 131776 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | ||||| | | || || || | ||||||||| Sbjct 131777 TGGATCTTGGCCTTGACATTGTCAATCGTGTCCGACGACTCCACTTCGAGGGTGATCGTC 131836 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || ||||| || || Sbjct 131837 TTGCCCGTGAGGGTCTTGACAAAGATCTG 131865 Score = 100 bits (110), Expect = 7e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 |||||||||| || |||||| || | ||| ||||||| | || | ||||| |||| Sbjct 130925 CAAGGTGGAGCGTGCTCTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCATCCTCCA 130984 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 |||||| |||||||| |||||||||||||| || || || || || ||||| | Sbjct 130985 ACTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGCGGGATCCCCTCCTTATCCTGGA 131044 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||| || || | ||||| | | || || || | ||| || ||||| | Sbjct 131045 TCTTCGCCTTGACATTGTCAATCGTGTCCGACGACTCGACTTCGAGCGTAATGGTCTTCC 131104 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 | || || || || ||||||||||| Sbjct 131105 CGGTAAGGGTCTTGACAAAAATTTG 131129 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 ||||| || || |||||||| |||| ||||||||| | ||| || | || || || ||| Sbjct 131435 AGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTACGCCCGTCCTCAAGC 131494 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || || ||||| ||||||||||| ||||| ||| ||||| ||||| || Sbjct 131495 TGCTTACCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCTTCCTTGTCCTGGATT 131554 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||| ||| |||| ||||| | | || || || | || || ||||| || Sbjct 131555 TTGGCCTTGACGTTATCGATCGTGTCGGAAGACTCGACCTCAAGGGTAATGGTCTTGCCG 131614 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 || | || ||||| || || || Sbjct 131615 GTCAACGTCTTCACGAAGATCTG 131637 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| |||||||| || |||||||| || | ||||||||| | | || Sbjct 131876 CGAAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGAGAGGGTA 131935 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || || |||||||| ||||||||||| || ||||||||||| || Sbjct 131936 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGG 131985 >seq606 Length=277477 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| || ||||| |||| |||||||||| | || | || || Sbjct 253792 AGGACAAGGTGGAGGGTGCTTTCCTTCTGGATATTGTAGTCAGAGAGCGTGCGCCCGTCC 253733 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||||||||| ||||| ||| || || || ||| Sbjct 253732 TCGAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCC 253673 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| |||| ||||| | | || || ||||||||||||||| Sbjct 253672 TGAATCTTGGCCTTCACGTTATCGATCGTGTCCGAGGACTCGACTTCCAACGTGATCGTC 253613 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || Sbjct 253612 TTGCCCGTGAGTGTCTTGACGAATATCTG 253584 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 |||||||| ||||||||||| |||| |||||| || | | || | ||||| || ||| Sbjct 253222 AGGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGAGAGCGTACGACCATCCTCGAGC 253163 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || || ||||| || ||||||||||||||| || || || ||||| ||| Sbjct 253162 TGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATC 253103 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||| ||| |||| ||||| | | || || || | |||||| ||||| || Sbjct 253102 TTCGCCTTGACGTTATCGATCGTGTCGGACGACTCGACCTCGAGCGTGATGGTCTTGCCA 253043 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 || | || || ||||| || || Sbjct 253042 GTCAAGGTCTTGACAAAGATCTG 253020 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 ||||| ||||| |||||||| |||| ||||||||| | | || | || || || ||| Sbjct 252932 AGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTGCGCCCGTCCTCGAGC 252873 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 ||||| || |||||||| || ||||||||||||||| Sbjct 252872 TGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCCGGA 252837 >seq1041 Length=164984 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| || || |||||||| |||| ||||||||||| || || Sbjct 54688 CGAAGGCGGAGGACAAGGTGCAGCGTTGACTCCTTCTGGATGTTGTAGTCAGACAGCGTG 54747 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || ||||||||||| || ||||| || || ||| || Sbjct 54748 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGATCAGGGGGAATGCCC 54807 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| |||||| | | || || || | | Sbjct 54808 TCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGC 54867 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || || || || || Sbjct 54868 GTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTG 54905 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 ||||||||||| || ||||| |||| |||||| || | | ||| | ||||| || ||| Sbjct 54983 AGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGACCATCCTCAAGC 55042 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || |||||||| |||||||||||||| ||| ||| || || ||||| ||| Sbjct 55043 TGCTTCCCCGCGAAGATAAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATC 55102 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 ||| ||| ||| || | |||||| | | || || || | ||||| ||||| ||| Sbjct 55103 TTTGCCTTGACGTTATCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCC 55162 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || || Sbjct 55163 GTGAGGGTCTTCACGAAGATCTG 55185 Score = 127 bits (140), Expect = 5e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| ||||| |||||||| |||| || ||||| | || ||||| ||||| |||| Sbjct 54473 CAAGGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGACAGAGTCCGACCATCCTCCA 54532 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 ||||||| || ||||| || || ||||||||||| || ||| || || ||||||| Sbjct 54533 GCTGCTTGCCCGCGAAAATAAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGAA 54592 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||| || || | ||||| | | || || || | |||||||||||| | Sbjct 54593 TCTTCGCCTTGACATTGTCAATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTCC 54652 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || || || ||||| || Sbjct 54653 CAGTGAGGGTCTTGACGAAAATCTG 54677 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||| ||||| || |||||| |||| ||||| ||||| || |||| || || ||||| Sbjct 54554 CTTATTTTCGCGGGCAAGCAGCTGGAGGATGGTCGGACTCTGTCCGACTATAATATCCAG 54495 Query 200995 AAAGAGTCTACTCTTCACCTTG 201016 || ||||||||||||||||||| Sbjct 54494 AAGGAGTCTACTCTTCACCTTG 54473 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| || | ||||||||| | | ||| | || || Sbjct 55205 AGGACGAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 55264 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 || |||||||| || |||||||| | ||||||||||| ||| Sbjct 55265 TCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGA 55306 >seq576 Length=23070 Score = 104 bits (114), Expect = 6e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||| |||||||||| | | |||||| |||||||||||| || | || | || || Sbjct 15327 AGGCCAAGGTGGAGGATGGTCTCCTTCCGGACGTTGTAGTTAGAGAGCGTGCGCCCGTCC 15268 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTC-CTTCTCGCTC 199536 || |||||||| || | |||||||| ||||||||| || ||| || | || || | || Sbjct 15267 TCGAGCTGCTTGCCCGTGAAGATGATACGCTGCTGATCGGGAGGGATGCACTCCTTG-TC 15209 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||||||| ||||||| || | ||||| | | || || |||||||| ||||| Sbjct 15208 CTGAATCTTGGCCTTCACGTTGTCAATCGTGTCCGAGGACTCGACTTCCAACGTAATCGT 15149 Query 199597 CTTACCCGT 199605 ||| |||| Sbjct 15148 CTTGTCCGT 15140 >seq855 Length=205711 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || |||||||| |||| ||||||||| || || | ||||| Sbjct 132359 AGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 132418 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| ||||||||||| || |||||||||||||| Sbjct 132419 TCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 132459 >seq428 Length=363050 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || |||||||| |||| ||||||||| | || | || || Sbjct 255489 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 255430 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| ||||||||||| || ||||||||||| || Sbjct 255429 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGG 255389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178902326105492